Functional clusters

Information

  • Type Gene Ontology
  • Description organic substance metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 3 CH_amhyb_220 23 30 0.000894714
Arabidopsis thaliana Chr3 3 CH_ath_266 27 42 0.00000598035
Arabidopsis thaliana Chr3 3 CH_ath_267 27 42 0.00000598035
Brassica carinata ChrB02 3 CH_bca_780 30 44 0.000344047
Magnolia biondii Chr10 3 CH_mbi_437 18 22 0.0000767225
Micromonas commoda Chr_01 3 CH_mco_8 19 22 0.0000989787
Sequoiadendron giganteum chr6 3 CH_sgi_1241 24 34 0.000302654
Sapria himalayana scaffold26_7557582 3 CH_shi_41 30 65 0.00000000798801
Solanum tuberosum ST4.03ch09 3 CH_stu_415 20 22 0.0000940162
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 4 CH_amhyb_220 23 30 0.000894714
Arabidopsis thaliana Chr3 4 CH_ath_266 27 42 0.00000598035
Arabidopsis thaliana Chr3 4 CH_ath_267 27 42 0.00000598035
Brassica carinata ChrB02 4 CH_bca_780 30 44 0.000344047
Magnolia biondii Chr10 4 CH_mbi_437 18 22 0.0000767225
Micromonas commoda Chr_01 4 CH_mco_8 19 22 0.0000989787
Sequoiadendron giganteum chr6 4 CH_sgi_1241 24 34 0.000302654
Sapria himalayana scaffold26_7557582 4 CH_shi_41 30 65 0.00000000798801
Solanum tuberosum ST4.03ch09 4 CH_stu_415 20 22 0.0000940162

Available child term results

Ontology identifier Description Number of clusters
GO:0000209 protein polyubiquitination 74
GO:0000256 allantoin catabolic process 2
GO:0000292 RNA fragment catabolic process 4
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000481 maturation of 5S rRNA 2
GO:0000719 photoreactive repair 12
GO:0000963 mitochondrial RNA processing 6
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0001731 formation of translation preinitiation complex 14
GO:0002943 tRNA dihydrouridine synthesis 24
GO:0005975 carbohydrate metabolic process 60
GO:0006007 glucose catabolic process 16
GO:0006013 mannose metabolic process 70
GO:0006032 chitin catabolic process 250
GO:0006066 alcohol metabolic process 6
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 38
GO:0006081 cellular aldehyde metabolic process 18
GO:0006210 thymine catabolic process 10
GO:0006269 DNA replication, synthesis of RNA primer 14
GO:0006348 chromatin silencing at telomere 6
GO:0006352 DNA-templated transcription, initiation 14
GO:0006369 termination of RNA polymerase II transcription 42
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 8
GO:0006397 mRNA processing 8
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006464 cellular protein modification process 56
GO:0006468 protein phosphorylation 824
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006575 cellular modified amino acid metabolic process 10
GO:0006680 glucosylceramide catabolic process 10
GO:0006729 tetrahydrobiopterin biosynthetic process 4
GO:0006749 glutathione metabolic process 210
GO:0006780 uroporphyrinogen III biosynthetic process 4
GO:0008299 isoprenoid biosynthetic process 26
GO:0009070 serine family amino acid biosynthetic process 4
GO:0009299 mRNA transcription 4
GO:0009440 cyanate catabolic process 4
GO:0009447 putrescine catabolic process 8
GO:0009451 RNA modification 6
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010401 pectic galactan metabolic process 4
GO:0010466 negative regulation of peptidase activity 14
GO:0015986 ATP synthesis coupled proton transport 22
GO:0016071 mRNA metabolic process 2
GO:0016124 xanthophyll catabolic process 12
GO:0016540 protein autoprocessing 18
GO:0016567 protein ubiquitination 136
GO:0018215 protein phosphopantetheinylation 8
GO:0018958 phenol-containing compound metabolic process 2
GO:0019762 glucosinolate catabolic process 12
GO:0030418 nicotianamine biosynthetic process 38
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030497 fatty acid elongation 6
GO:0031047 gene silencing by RNA 4
GO:0031297 replication fork processing 18
GO:0031408 oxylipin biosynthetic process 24
GO:0032264 IMP salvage 18
GO:0032543 mitochondrial translation 8
GO:0032881 regulation of polysaccharide metabolic process 6
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 18
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 8
GO:0034434 sterol esterification 108
GO:0034477 U6 snRNA 3'-end processing 8
GO:0035278 miRNA mediated inhibition of translation 56
GO:0036066 protein O-linked fucosylation 14
GO:0042276 error-prone translesion synthesis 36
GO:0043170 macromolecule metabolic process 18
GO:0043419 urea catabolic process 4
GO:0043632 modification-dependent macromolecule catabolic process 4
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044260 cellular macromolecule metabolic process 32
GO:0045116 protein neddylation 2
GO:0045492 xylan biosynthetic process 18
GO:0046244 salicylic acid catabolic process 42
GO:0046256 2,4,6-trinitrotoluene catabolic process 26
GO:0046514 ceramide catabolic process 6
GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 4
GO:0060255 regulation of macromolecule metabolic process 16
GO:0070534 protein K63-linked ubiquitination 10
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 26
GO:0071076 RNA 3' uridylation 18
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0080142 regulation of salicylic acid biosynthetic process 10
GO:0080178 5-carbamoylmethyl uridine residue modification 2
GO:0106118 regulation of sterol biosynthetic process 4
GO:0106146 sideretin biosynthesis 14
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1900865 chloroplast RNA modification 8
GO:1901361 organic cyclic compound catabolic process 2
GO:1901430 positive regulation of syringal lignin biosynthetic process 14
GO:1901599 (-)-pinoresinol biosynthetic process 70
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:2000636 positive regulation of primary miRNA processing 6
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000398 mRNA splicing, via spliceosome 20
GO:0000413 protein peptidyl-prolyl isomerization 26
GO:0002100 tRNA wobble adenosine to inosine editing 4
GO:0002182 cytoplasmic translational elongation 20
GO:0006003 fructose 2,6-bisphosphate metabolic process 16
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006096 glycolytic process 20
GO:0006106 fumarate metabolic process 26
GO:0006107 oxaloacetate metabolic process 6
GO:0006139 nucleobase-containing compound metabolic process 8
GO:0006231 dTMP biosynthetic process 2
GO:0006289 nucleotide-excision repair 8
GO:0006308 DNA catabolic process 40
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006351 transcription, DNA-templated 10
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006367 transcription initiation from RNA polymerase II promoter 6
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006480 N-terminal protein amino acid methylation 10
GO:0006486 protein glycosylation 86
GO:0006499 N-terminal protein myristoylation 4
GO:0006629 lipid metabolic process 80
GO:0006633 fatty acid biosynthetic process 46
GO:0006635 fatty acid beta-oxidation 6
GO:0006642 triglyceride mobilization 2
GO:0006721 terpenoid metabolic process 18
GO:0006784 heme A biosynthetic process 22
GO:0008380 RNA splicing 16
GO:0009099 valine biosynthetic process 2
GO:0009684 indoleacetic acid biosynthetic process 2
GO:0009690 cytokinin metabolic process 10
GO:0009805 coumarin biosynthetic process 6
GO:0009809 lignin biosynthetic process 24
GO:0009972 cytidine deamination 8
GO:0010241 ent-kaurene oxidation to kaurenoic acid 34
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010383 cell wall polysaccharide metabolic process 26
GO:0010422 regulation of brassinosteroid biosynthetic process 44
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0010731 protein glutathionylation 56
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0015936 coenzyme A metabolic process 10
GO:0016102 diterpenoid biosynthetic process 82
GO:0016121 carotene catabolic process 4
GO:0016554 cytidine to uridine editing 14
GO:0017014 protein nitrosylation 10
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase 24
GO:0017196 N-terminal peptidyl-methionine acetylation 12
GO:0018205 peptidyl-lysine modification 6
GO:0018343 protein farnesylation 2
GO:0019218 regulation of steroid metabolic process 30
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019310 inositol catabolic process 56
GO:0019408 dolichol biosynthetic process 18
GO:0019481 L-alanine catabolic process, by transamination 8
GO:0030244 cellulose biosynthetic process 10
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 30
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0031365 N-terminal protein amino acid modification 10
GO:0033306 phytol metabolic process 74
GO:0033387 putrescine biosynthetic process from ornithine 34
GO:0034720 histone H3-K4 demethylation 8
GO:0035606 peptidyl-cysteine S-trans-nitrosylation 26
GO:0036297 interstrand cross-link repair 12
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 16
GO:0042726 flavin-containing compound metabolic process 2
GO:0043971 histone H3-K18 acetylation 56
GO:0043987 histone H3-S10 phosphorylation 2
GO:0046373 L-arabinose metabolic process 52
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070179 D-serine biosynthetic process 40
GO:0070262 peptidyl-serine dephosphorylation 24
GO:0080003 thalianol metabolic process 6
GO:0080009 mRNA methylation 12
GO:0080188 gene silencing by RNA-directed DNA methylation 42
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090615 mitochondrial mRNA processing 10
GO:0090617 mitochondrial mRNA 5'-end processing 74
GO:0097264 self proteolysis 12
GO:1900369 negative regulation of RNA interference 4
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901616 organic hydroxy compound catabolic process 28
GO:1904294 positive regulation of ERAD pathway 12
GO:1904380 endoplasmic reticulum mannose trimming 14
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 18
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2000214 regulation of proline metabolic process 12
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000762 regulation of phenylpropanoid metabolic process 28
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 14
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000154 rRNA modification 10
GO:0000183 rDNA heterochromatin assembly 16
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 18
GO:0000245 spliceosomal complex assembly 24
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000724 double-strand break repair via homologous recombination 6
GO:0000737 DNA catabolic process, endonucleolytic 16
GO:0001561 fatty acid alpha-oxidation 42
GO:0002084 protein depalmitoylation 6
GO:0006000 fructose metabolic process 16
GO:0006002 fructose 6-phosphate metabolic process 8
GO:0006108 malate metabolic process 2
GO:0006228 UTP biosynthetic process 2
GO:0006273 lagging strand elongation 6
GO:0006282 regulation of DNA repair 2
GO:0006342 chromatin silencing 16
GO:0006353 DNA-templated transcription, termination 36
GO:0006360 transcription by RNA polymerase I 14
GO:0006364 rRNA processing 10
GO:0006400 tRNA modification 14
GO:0006413 translational initiation 8
GO:0006506 GPI anchor biosynthetic process 14
GO:0006508 proteolysis 12
GO:0006559 L-phenylalanine catabolic process 6
GO:0006639 acylglycerol metabolic process 2
GO:0006694 steroid biosynthetic process 14
GO:0006722 triterpenoid metabolic process 22
GO:0008618 7-methylguanosine metabolic process 12
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 20
GO:0009116 nucleoside metabolic process 50
GO:0009143 nucleoside triphosphate catabolic process 14
GO:0009249 protein lipoylation 2
GO:0009250 glucan biosynthetic process 4
GO:0009251 glucan catabolic process 8
GO:0009718 anthocyanin-containing compound biosynthetic process 4
GO:0009823 cytokinin catabolic process 18
GO:0010025 wax biosynthetic process 8
GO:0010304 PSII associated light-harvesting complex II catabolic process 2
GO:0010337 regulation of salicylic acid metabolic process 16
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010390 histone monoubiquitination 20
GO:0010398 xylogalacturonan metabolic process 6
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0016042 lipid catabolic process 12
GO:0016075 rRNA catabolic process 6
GO:0016099 monoterpenoid biosynthetic process 12
GO:0016973 poly(A)+ mRNA export from nucleus 8
GO:0018108 peptidyl-tyrosine phosphorylation 6
GO:0018171 peptidyl-cysteine oxidation 6
GO:0018316 peptide cross-linking via L-cystine 2
GO:0018901 2,4-dichlorophenoxyacetic acid metabolic process 16
GO:0019538 protein metabolic process 26
GO:0030245 cellulose catabolic process 8
GO:0031119 tRNA pseudouridine synthesis 10
GO:0031508 pericentric heterochromatin assembly 18
GO:0031540 regulation of anthocyanin biosynthetic process 8
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0034587 piRNA metabolic process 2
GO:0034655 nucleobase-containing compound catabolic process 2
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035970 peptidyl-threonine dephosphorylation 2
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 4
GO:0042128 nitrate assimilation 8
GO:0042180 cellular ketone metabolic process 4
GO:0042343 indole glucosinolate metabolic process 8
GO:0043247 telomere maintenance in response to DNA damage 8
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0044242 cellular lipid catabolic process 2
GO:0044257 cellular protein catabolic process 2
GO:0044267 cellular protein metabolic process 24
GO:0045493 xylan catabolic process 76
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045901 positive regulation of translational elongation 18
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0046345 abscisic acid catabolic process 16
GO:0046777 protein autophosphorylation 12
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0070544 histone H3-K36 demethylation 4
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:0070647 protein modification by small protein conjugation or removal 2
GO:0072344 rescue of stalled ribosome 12
GO:0080156 mitochondrial mRNA modification 10
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:0106035 protein maturation by [4Fe-4S] cluster transfer 6
GO:0140053 mitochondrial gene expression 2
GO:1901362 organic cyclic compound biosynthetic process 6
GO:1901537 positive regulation of DNA demethylation 18
GO:1901564 organonitrogen compound metabolic process 32
GO:1901575 organic substance catabolic process 16
GO:1901576 organic substance biosynthetic process 8
GO:1902916 positive regulation of protein polyubiquitination 8
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:0000375 RNA splicing, via transesterification reactions 4
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0001172 transcription, RNA-templated 12
GO:0002949 tRNA threonylcarbamoyladenosine modification 8
GO:0005976 polysaccharide metabolic process 8
GO:0005996 monosaccharide metabolic process 4
GO:0005997 xylulose metabolic process 12
GO:0006060 sorbitol metabolic process 26
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006167 AMP biosynthetic process 8
GO:0006169 adenosine salvage 10
GO:0006281 DNA repair 16
GO:0006383 transcription by RNA polymerase III 10
GO:0006396 RNA processing 4
GO:0006417 regulation of translation 8
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006465 signal peptide processing 14
GO:0006479 protein methylation 2
GO:0006518 peptide metabolic process 14
GO:0006571 tyrosine biosynthetic process 4
GO:0006591 ornithine metabolic process 14
GO:0006624 vacuolar protein processing 18
GO:0006631 fatty acid metabolic process 8
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006747 FAD biosynthetic process 2
GO:0006778 porphyrin-containing compound metabolic process 2
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0009082 branched-chain amino acid biosynthetic process 8
GO:0009452 7-methylguanosine RNA capping 10
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010166 wax metabolic process 4
GO:0010394 homogalacturonan metabolic process 12
GO:0010426 DNA methylation on cytosine within a CHH sequence 8
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0010498 proteasomal protein catabolic process 2
GO:0010581 regulation of starch biosynthetic process 4
GO:0010683 tricyclic triterpenoid metabolic process 2
GO:0010896 regulation of triglyceride catabolic process 8
GO:0010951 negative regulation of endopeptidase activity 28
GO:0015680 protein maturation by copper ion transfer 2
GO:0015977 carbon fixation 6
GO:0016053 organic acid biosynthetic process 4
GO:0016101 diterpenoid metabolic process 32
GO:0016255 attachment of GPI anchor to protein 14
GO:0018345 protein palmitoylation 2
GO:0019365 pyridine nucleotide salvage 6
GO:0019567 arabinose biosynthetic process 2
GO:0030327 prenylated protein catabolic process 12
GO:0031937 positive regulation of chromatin silencing 14
GO:0032774 RNA biosynthetic process 2
GO:0033014 tetrapyrrole biosynthetic process 2
GO:0033491 coniferin metabolic process 10
GO:0034660 ncRNA metabolic process 6
GO:0035195 gene silencing by miRNA 4
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042819 vitamin B6 biosynthetic process 12
GO:0043144 sno(s)RNA processing 4
GO:0043436 oxoacid metabolic process 8
GO:0043447 alkane biosynthetic process 6
GO:0043543 protein acylation 4
GO:0043693 monoterpene biosynthetic process 4
GO:0043968 histone H2A acetylation 10
GO:0045003 double-strand break repair via synthesis-dependent strand annealing 2
GO:0045292 mRNA cis splicing, via spliceosome 22
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0046337 phosphatidylethanolamine metabolic process 2
GO:0046512 sphingosine biosynthetic process 16
GO:0046520 sphingoid biosynthetic process 18
GO:0046856 phosphatidylinositol dephosphorylation 8
GO:0046938 phytochelatin biosynthetic process 52
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051103 DNA ligation involved in DNA repair 24
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0061715 miRNA 2'-O-methylation 6
GO:0071900 regulation of protein serine/threonine kinase activity 8
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080163 regulation of protein serine/threonine phosphatase activity 6
GO:0080180 2-methylguanosine metabolic process 8
GO:0090304 nucleic acid metabolic process 10
GO:0097428 protein maturation by iron-sulfur cluster transfer 16
GO:0097510 base-excision repair, AP site formation via deaminated base removal 12
GO:1900088 regulation of inositol biosynthetic process 4
GO:1900370 positive regulation of RNA interference 22
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901136 carbohydrate derivative catabolic process 4
GO:1901162 primary amino compound biosynthetic process 2
GO:1901360 organic cyclic compound metabolic process 8
GO:1901565 organonitrogen compound catabolic process 8
GO:1901566 organonitrogen compound biosynthetic process 6
GO:1901957 regulation of cutin biosynthetic process 12
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:1904292 regulation of ERAD pathway 2
GO:1904667 negative regulation of ubiquitin protein ligase activity 8
GO:2001006 regulation of cellulose biosynthetic process 4
GO:0000024 maltose biosynthetic process 12
GO:0000025 maltose catabolic process 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0005986 sucrose biosynthetic process 4
GO:0005992 trehalose biosynthetic process 14
GO:0006094 gluconeogenesis 4
GO:0006101 citrate metabolic process 2
GO:0006105 succinate metabolic process 14
GO:0006259 DNA metabolic process 4
GO:0006261 DNA-dependent DNA replication 20
GO:0006264 mitochondrial DNA replication 8
GO:0006270 DNA replication initiation 2
GO:0006275 regulation of DNA replication 8
GO:0006303 double-strand break repair via nonhomologous end joining 2
GO:0006310 DNA recombination 4
GO:0006370 7-methylguanosine mRNA capping 2
GO:0006414 translational elongation 2
GO:0006415 translational termination 12
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006537 glutamate biosynthetic process 10
GO:0006542 glutamine biosynthetic process 8
GO:0006562 proline catabolic process 4
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006651 diacylglycerol biosynthetic process 26
GO:0006654 phosphatidic acid biosynthetic process 4
GO:0007131 reciprocal meiotic recombination 8
GO:0008202 steroid metabolic process 4
GO:0009234 menaquinone biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0009423 chorismate biosynthetic process 2
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0009697 salicylic acid biosynthetic process 28
GO:0009759 indole glucosinolate biosynthetic process 20
GO:0009808 lignin metabolic process 6
GO:0009969 xyloglucan biosynthetic process 4
GO:0010236 plastoquinone biosynthetic process 2
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010430 fatty acid omega-oxidation 4
GO:0010468 regulation of gene expression 18
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0015074 DNA integration 24
GO:0015995 chlorophyll biosynthetic process 4
GO:0016104 triterpenoid biosynthetic process 6
GO:0016114 terpenoid biosynthetic process 6
GO:0016998 cell wall macromolecule catabolic process 8
GO:0017003 protein-heme linkage 4
GO:0017009 protein-phycocyanobilin linkage 14
GO:0018142 protein-DNA covalent cross-linking 16
GO:0018283 iron incorporation into metallo-sulfur cluster 6
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 6
GO:0019252 starch biosynthetic process 2
GO:0019264 glycine biosynthetic process from serine 14
GO:0019305 dTDP-rhamnose biosynthetic process 6
GO:0019318 hexose metabolic process 10
GO:0019346 transsulfuration 8
GO:0019447 D-cysteine catabolic process 12
GO:0019464 glycine decarboxylation via glycine cleavage system 4
GO:0019760 glucosinolate metabolic process 4
GO:0019988 charged-tRNA amino acid modification 12
GO:0030163 protein catabolic process 6
GO:0032055 negative regulation of translation in response to stress 2
GO:0032922 circadian regulation of gene expression 2
GO:0033234 negative regulation of protein sumoylation 6
GO:0033473 indoleacetic acid conjugate metabolic process 2
GO:0033506 glucosinolate biosynthetic process from homomethionine 4
GO:0033511 luteolin biosynthetic process 8
GO:0034654 nucleobase-containing compound biosynthetic process 14
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4
GO:0042177 negative regulation of protein catabolic process 14
GO:0042372 phylloquinone biosynthetic process 10
GO:0042868 antisense RNA metabolic process 4
GO:0043100 pyrimidine nucleobase salvage 10
GO:0043412 macromolecule modification 10
GO:0044030 regulation of DNA methylation 6
GO:0045339 farnesyl diphosphate catabolic process 14
GO:0045488 pectin metabolic process 4
GO:0046202 cyanide biosynthetic process 2
GO:0046394 carboxylic acid biosynthetic process 6
GO:0046466 membrane lipid catabolic process 4
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0051973 positive regulation of telomerase activity 14
GO:0070455 positive regulation of heme biosynthetic process 4
GO:0080058 protein deglutathionylation 4
GO:0090357 regulation of tryptophan metabolic process 2
GO:0098734 macromolecule depalmitoylation 2
GO:1900364 negative regulation of mRNA polyadenylation 10
GO:1901038 cyanidin 3-O-glucoside metabolic process 14
GO:1901601 strigolactone biosynthetic process 10
GO:1901695 tyramine biosynthetic process 20
GO:1901811 beta-carotene catabolic process 10
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1905642 negative regulation of DNA methylation 10
GO:1990937 xylan acetylation 10
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4
GO:2000905 negative regulation of starch metabolic process 6
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001141 regulation of RNA biosynthetic process 10
GO:0000372 Group I intron splicing 10
GO:0000387 spliceosomal snRNP assembly 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0000723 telomere maintenance 10
GO:0000964 mitochondrial RNA 5'-end processing 10
GO:0001676 long-chain fatty acid metabolic process 2
GO:0005985 sucrose metabolic process 4
GO:0006090 pyruvate metabolic process 6
GO:0006154 adenosine catabolic process 38
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006233 dTDP biosynthetic process 4
GO:0006260 DNA replication 4
GO:0006265 DNA topological change 2
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006384 transcription initiation from RNA polymerase III promoter 2
GO:0006412 translation 8
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006529 asparagine biosynthetic process 14
GO:0006569 tryptophan catabolic process 18
GO:0006592 ornithine biosynthetic process 12
GO:0006741 NADP biosynthetic process 16
GO:0006788 heme oxidation 2
GO:0008610 lipid biosynthetic process 12
GO:0009166 nucleotide catabolic process 2
GO:0009190 cyclic nucleotide biosynthetic process 2
GO:0009807 lignan biosynthetic process 14
GO:0009963 positive regulation of flavonoid biosynthetic process 6
GO:0010366 negative regulation of ethylene biosynthetic process 4
GO:0010406 classical arabinogalactan protein metabolic process 8
GO:0010407 non-classical arabinogalactan protein metabolic process 4
GO:0010604 positive regulation of macromolecule metabolic process 6
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0015994 chlorophyll metabolic process 2
GO:0016126 sterol biosynthetic process 4
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 2
GO:0019354 siroheme biosynthetic process 2
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0019742 pentacyclic triterpenoid metabolic process 12
GO:0019745 pentacyclic triterpenoid biosynthetic process 6
GO:0030388 fructose 1,6-bisphosphate metabolic process 20
GO:0030592 DNA ADP-ribosylation 14
GO:0031935 regulation of chromatin silencing 8
GO:0032147 activation of protein kinase activity 10
GO:0032875 regulation of DNA endoreduplication 10
GO:0033355 ascorbate glutathione cycle 22
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0035065 regulation of histone acetylation 6
GO:0035884 arabinan biosynthetic process 6
GO:0036265 RNA (guanine-N7)-methylation 4
GO:0043039 tRNA aminoacylation 6
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043666 regulation of phosphoprotein phosphatase activity 4
GO:0044042 glucan metabolic process 2
GO:0044265 cellular macromolecule catabolic process 12
GO:0045122 aflatoxin biosynthetic process 10
GO:0045338 farnesyl diphosphate metabolic process 6
GO:0045739 positive regulation of DNA repair 4
GO:0045834 positive regulation of lipid metabolic process 2
GO:0045910 negative regulation of DNA recombination 2
GO:0046110 xanthine metabolic process 8
GO:0046283 anthocyanin-containing compound metabolic process 4
GO:0046340 diacylglycerol catabolic process 8
GO:0046434 organophosphate catabolic process 6
GO:0046459 short-chain fatty acid metabolic process 2
GO:0046473 phosphatidic acid metabolic process 4
GO:0046500 S-adenosylmethionine metabolic process 2
GO:0046710 GDP metabolic process 2
GO:0046900 tetrahydrofolylpolyglutamate metabolic process 6
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process 6
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0051502 diterpene phytoalexin biosynthetic process 16
GO:0051762 sesquiterpene biosynthetic process 14
GO:0055086 nucleobase-containing small molecule metabolic process 4
GO:0060966 regulation of gene silencing by RNA 2
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0071108 protein K48-linked deubiquitination 4
GO:0080024 indolebutyric acid metabolic process 2
GO:0090056 regulation of chlorophyll metabolic process 2
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090431 alkyl caffeate ester biosynthetic process 6
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic 2
GO:0097503 sialylation 2
GO:0097659 nucleic acid-templated transcription 10
GO:0106147 fraxetin biosynthesis 10
GO:1900030 regulation of pectin biosynthetic process 2
GO:1900363 regulation of mRNA polyadenylation 2
GO:1900871 chloroplast mRNA modification 8
GO:1901615 organic hydroxy compound metabolic process 6
GO:1901663 quinone biosynthetic process 4
GO:1901937 beta-caryophyllene biosynthetic process 4
GO:1903311 regulation of mRNA metabolic process 22
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2001294 malonyl-CoA catabolic process 18
GO:0000012 single strand break repair 6
GO:0000272 polysaccharide catabolic process 10
GO:0000373 Group II intron splicing 14
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 2
GO:0000966 RNA 5'-end processing 24
GO:0001881 receptor recycling 2
GO:0006004 fucose metabolic process 4
GO:0006082 organic acid metabolic process 2
GO:0006148 inosine catabolic process 18
GO:0006223 uracil salvage 2
GO:0006279 premeiotic DNA replication 6
GO:0006376 mRNA splice site selection 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006551 leucine metabolic process 6
GO:0006572 tyrosine catabolic process 6
GO:0006581 acetylcholine catabolic process 2
GO:0006596 polyamine biosynthetic process 6
GO:0006644 phospholipid metabolic process 2
GO:0006666 3-keto-sphinganine metabolic process 2
GO:0006760 folic acid-containing compound metabolic process 2
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 2
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 20
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 2
GO:0009231 riboflavin biosynthetic process 2
GO:0010364 regulation of ethylene biosynthetic process 4
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010405 arabinogalactan protein metabolic process 4
GO:0010409 extensin metabolic process 2
GO:0010501 RNA secondary structure unwinding 8
GO:0010597 green leaf volatile biosynthetic process 8
GO:0010608 posttranscriptional regulation of gene expression 6
GO:0010628 positive regulation of gene expression 4
GO:0010629 negative regulation of gene expression 2
GO:0016070 RNA metabolic process 6
GO:0016106 sesquiterpenoid biosynthetic process 6
GO:0016127 sterol catabolic process 10
GO:0016139 glycoside catabolic process 4
GO:0016233 telomere capping 2
GO:0016458 gene silencing 4
GO:0016579 protein deubiquitination 2
GO:0019374 galactolipid metabolic process 2
GO:0019433 triglyceride catabolic process 10
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019637 organophosphate metabolic process 4
GO:0030187 melatonin biosynthetic process 4
GO:0031054 pre-miRNA processing 2
GO:0031222 arabinan catabolic process 8
GO:0031407 oxylipin metabolic process 8
GO:0031542 positive regulation of anthocyanin biosynthetic process 2
GO:0032876 negative regulation of DNA endoreduplication 2
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0033466 trans-zeatin biosynthetic process 2
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034308 primary alcohol metabolic process 4
GO:0034472 snRNA 3'-end processing 2
GO:0034637 cellular carbohydrate biosynthetic process 2
GO:0034645 cellular macromolecule biosynthetic process 14
GO:0035194 post-transcriptional gene silencing by RNA 2
GO:0035246 peptidyl-arginine N-methylation 2
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035825 homologous recombination 12
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0040029 regulation of gene expression, epigenetic 4
GO:0042138 meiotic DNA double-strand break formation 10
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 8
GO:0042758 long-chain fatty acid catabolic process 2
GO:0042779 tRNA 3'-trailer cleavage 4
GO:0043484 regulation of RNA splicing 2
GO:0043967 histone H4 acetylation 6
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045490 pectin catabolic process 10
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0046109 uridine biosynthetic process 2
GO:0046167 glycerol-3-phosphate biosynthetic process 4
GO:0046656 folic acid biosynthetic process 2
GO:0051070 galactomannan biosynthetic process 8
GO:0051791 medium-chain fatty acid metabolic process 6
GO:0052746 inositol phosphorylation 10
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060968 regulation of gene silencing 4
GO:0070897 transcription preinitiation complex assembly 4
GO:0071586 CAAX-box protein processing 14
GO:0090042 tubulin deacetylation 6
GO:0097222 mitochondrial mRNA polyadenylation 6
GO:1900386 positive regulation of flavonol biosynthetic process 4
GO:1901606 alpha-amino acid catabolic process 8
GO:1901617 organic hydroxy compound biosynthetic process 4
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902464 regulation of histone H3-K27 trimethylation 8
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1904277 negative regulation of wax biosynthetic process 14
GO:1905435 regulation of histone H3-K4 trimethylation 4
GO:1990067 intrachromosomal DNA recombination 4
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12
GO:1990164 histone H2A phosphorylation 8
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000469 cleavage involved in rRNA processing 2
GO:0000706 meiotic DNA double-strand break processing 4
GO:0000712 resolution of meiotic recombination intermediates 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0005987 sucrose catabolic process 4
GO:0006006 glucose metabolic process 12
GO:0006083 acetate metabolic process 4
GO:0006102 isocitrate metabolic process 2
GO:0006104 succinyl-CoA metabolic process 6
GO:0006109 regulation of carbohydrate metabolic process 4
GO:0006110 regulation of glycolytic process 2
GO:0006226 dUMP biosynthetic process 6
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006368 transcription elongation from RNA polymerase II promoter 4
GO:0006393 termination of mitochondrial transcription 2
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006516 glycoprotein catabolic process 2
GO:0006580 ethanolamine metabolic process 2
GO:0006662 glycerol ether metabolic process 10
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006799 polyphosphate biosynthetic process 2
GO:0009059 macromolecule biosynthetic process 2
GO:0009309 amine biosynthetic process 2
GO:0009693 ethylene biosynthetic process 12
GO:0009813 flavonoid biosynthetic process 6
GO:0010024 phytochromobilin biosynthetic process 6
GO:0010028 xanthophyll cycle 2
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010133 proline catabolic process to glutamate 4
GO:0010213 non-photoreactive DNA repair 2
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010467 gene expression 2
GO:0010556 regulation of macromolecule biosynthetic process 2
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0016122 xanthophyll metabolic process 2
GO:0016180 snRNA processing 6
GO:0016485 protein processing 4
GO:0016575 histone deacetylation 8
GO:0018023 peptidyl-lysine trimethylation 2
GO:0018117 protein adenylylation 2
GO:0019544 arginine catabolic process to glutamate 2
GO:0019632 shikimate metabolic process 6
GO:0019761 glucosinolate biosynthetic process 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031425 chloroplast RNA processing 2
GO:0032049 cardiolipin biosynthetic process 8
GO:0032268 regulation of cellular protein metabolic process 4
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0033013 tetrapyrrole metabolic process 2
GO:0033302 quercetin O-glucoside metabolic process 4
GO:0033353 S-adenosylmethionine cycle 6
GO:0033481 galacturonate biosynthetic process 2
GO:0034227 tRNA thio-modification 12
GO:0034982 mitochondrial protein processing 2
GO:0035600 tRNA methylthiolation 2
GO:0036211 protein modification process 6
GO:0042167 heme catabolic process 4
GO:0042344 indole glucosinolate catabolic process 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0043686 co-translational protein modification 4
GO:0044209 AMP salvage 8
GO:0044255 cellular lipid metabolic process 4
GO:0045017 glycerolipid biosynthetic process 2
GO:0045727 positive regulation of translation 18
GO:0045814 negative regulation of gene expression, epigenetic 2
GO:0046104 thymidine metabolic process 4
GO:0046189 phenol-containing compound biosynthetic process 2
GO:0048255 mRNA stabilization 4
GO:0048358 mucilage pectin biosynthetic process 4
GO:0051252 regulation of RNA metabolic process 4
GO:0051555 flavonol biosynthetic process 4
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0071139 resolution of recombination intermediates 2
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072523 purine-containing compound catabolic process 2
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic 4
GO:0097167 circadian regulation of translation 4
GO:1900368 regulation of RNA interference 2
GO:1901293 nucleoside phosphate biosynthetic process 2
GO:1901658 glycosyl compound catabolic process 2
GO:1901747 prephenate(2-) biosynthetic process 2
GO:1901847 nicotinate metabolic process 6
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:1903509 liposaccharide metabolic process 4
GO:1903647 negative regulation of chlorophyll catabolic process 10
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:2000029 regulation of proanthocyanidin biosynthetic process 2
GO:2000104 negative regulation of DNA-dependent DNA replication 6
GO:2000112 regulation of cellular macromolecule biosynthetic process 8
GO:2000117 negative regulation of cysteine-type endopeptidase activity 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000495 box H/ACA RNA 3'-end processing 2
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0001510 RNA methylation 4
GO:0002940 tRNA N2-guanine methylation 2
GO:0005983 starch catabolic process 4
GO:0005993 trehalose catabolic process 4
GO:0006020 inositol metabolic process 2
GO:0006024 glycosaminoglycan biosynthetic process 2
GO:0006045 N-acetylglucosamine biosynthetic process 2
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006406 mRNA export from nucleus 4
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006471 protein ADP-ribosylation 2
GO:0006487 protein N-linked glycosylation 2
GO:0006493 protein O-linked glycosylation 2
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006541 glutamine metabolic process 2
GO:0006744 ubiquinone biosynthetic process 2
GO:0008215 spermine metabolic process 2
GO:0008654 phospholipid biosynthetic process 4
GO:0009064 glutamine family amino acid metabolic process 2
GO:0009069 serine family amino acid metabolic process 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009127 purine nucleoside monophosphate biosynthetic process 2
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009228 thiamine biosynthetic process 4
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009308 amine metabolic process 2
GO:0009686 gibberellin biosynthetic process 2
GO:0009691 cytokinin biosynthetic process 2
GO:0009695 jasmonic acid biosynthetic process 4
GO:0010023 proanthocyanidin biosynthetic process 12
GO:0010206 photosystem II repair 2
GO:0010412 mannan metabolic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0016093 polyprenol metabolic process 4
GO:0016123 xanthophyll biosynthetic process 2
GO:0016444 somatic cell DNA recombination 2
GO:0016598 protein arginylation 2
GO:0018298 protein-chromophore linkage 2
GO:0019432 triglyceride biosynthetic process 2
GO:0030422 production of siRNA involved in RNA interference 2
GO:0030639 polyketide biosynthetic process 6
GO:0031396 regulation of protein ubiquitination 2
GO:0031998 regulation of fatty acid beta-oxidation 2
GO:0032447 protein urmylation 2
GO:0033320 UDP-D-xylose biosynthetic process 4
GO:0033499 galactose catabolic process via UDP-galactose 2
GO:0033523 histone H2B ubiquitination 2
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 4
GO:0034968 histone lysine methylation 2
GO:0034970 histone H3-R2 methylation 2
GO:0036123 histone H3-K9 dimethylation 2
GO:0042183 formate catabolic process 2
GO:0042732 D-xylose metabolic process 6
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0042793 plastid transcription 2
GO:0042794 plastid rRNA transcription 2
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043255 regulation of carbohydrate biosynthetic process 4
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043970 histone H3-K9 acetylation 4
GO:0043981 histone H4-K5 acetylation 2
GO:0043985 histone H4-R3 methylation 2
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045489 pectin biosynthetic process 10
GO:0045815 positive regulation of gene expression, epigenetic 2
GO:0045905 positive regulation of translational termination 2
GO:0046168 glycerol-3-phosphate catabolic process 2
GO:0046203 spermidine catabolic process 2
GO:0046274 lignin catabolic process 2
GO:0046369 galactose biosynthetic process 2
GO:0046395 carboxylic acid catabolic process 6
GO:0046470 phosphatidylcholine metabolic process 2
GO:0046488 phosphatidylinositol metabolic process 2
GO:0046855 inositol phosphate dephosphorylation 4
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 2
GO:0070932 histone H3 deacetylation 2
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2
GO:0080028 nitrile biosynthetic process 2
GO:0080065 4-alpha-methyl-delta7-sterol oxidation 4
GO:0080149 sucrose induced translational repression 2
GO:0080179 1-methylguanosine metabolic process 2
GO:0090410 malonate catabolic process 2
GO:0098532 histone H3-K27 trimethylation 4
GO:0106046 guanine deglycation, glyoxal removal 2
GO:1900109 regulation of histone H3-K9 dimethylation 4
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901959 positive regulation of cutin biosynthetic process 2
GO:1905038 regulation of membrane lipid metabolic process 2
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000162 tryptophan biosynthetic process 2
GO:0000270 peptidoglycan metabolic process 2
GO:0000271 polysaccharide biosynthetic process 2
GO:0000380 alternative mRNA splicing, via spliceosome 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0006315 homing of group II introns 2
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006470 protein dephosphorylation 2
GO:0006520 cellular amino acid metabolic process 2
GO:0006525 arginine metabolic process 2
GO:0006544 glycine metabolic process 2
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006560 proline metabolic process 2
GO:0006574 valine catabolic process 4
GO:0006661 phosphatidylinositol biosynthetic process 2
GO:0006671 phytosphingosine metabolic process 4
GO:0007004 telomere maintenance via telomerase 2
GO:0008033 tRNA processing 2
GO:0009073 aromatic amino acid family biosynthetic process 2
GO:0009089 lysine biosynthetic process via diaminopimelate 2
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2
GO:0009303 rRNA transcription 2
GO:0009448 gamma-aminobutyric acid metabolic process 2
GO:0010143 cutin biosynthetic process 2
GO:0010216 maintenance of DNA methylation 2
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0010586 miRNA metabolic process 2
GO:0015938 coenzyme A catabolic process 2
GO:0016024 CDP-diacylglycerol biosynthetic process 2
GO:0016094 polyprenol biosynthetic process 4
GO:0016131 brassinosteroid metabolic process 2
GO:0016569 covalent chromatin modification 2
GO:0016573 histone acetylation 4
GO:0018193 peptidyl-amino acid modification 2
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019500 cyanide catabolic process 2
GO:0019563 glycerol catabolic process 2
GO:0019605 butyrate metabolic process 2
GO:0030488 tRNA methylation 2
GO:0031293 membrane protein intracellular domain proteolysis 2
GO:0031848 protection from non-homologous end joining at telomere 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032269 negative regulation of cellular protein metabolic process 2
GO:0032324 molybdopterin cofactor biosynthetic process 4
GO:0032776 DNA methylation on cytosine 2
GO:0034355 NAD salvage 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0042168 heme metabolic process 2
GO:0042214 terpene metabolic process 2
GO:0042760 very long-chain fatty acid catabolic process 2
GO:0043043 peptide biosynthetic process 2
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043692 monoterpene metabolic process 2
GO:0043984 histone H4-K16 acetylation 2
GO:0044036 cell wall macromolecule metabolic process 2
GO:0044264 cellular polysaccharide metabolic process 2
GO:0045732 positive regulation of protein catabolic process 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0046165 alcohol biosynthetic process 2
GO:0046184 aldehyde biosynthetic process 2
GO:0046854 phosphatidylinositol phosphate biosynthetic process 2
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0051254 positive regulation of RNA metabolic process 4
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA 2
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071932 replication fork reversal 2
GO:0072527 pyrimidine-containing compound metabolic process 2
GO:0072684 mitochondrial tRNA 3'-trailer cleavage, endonucleolytic 2
GO:0090116 C-5 methylation of cytosine 4
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0098789 pre-mRNA cleavage required for polyadenylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:0120252 hydrocarbon metabolic process 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900384 regulation of flavonol biosynthetic process 4
GO:1901006 ubiquinone-6 biosynthetic process 2
GO:1901135 carbohydrate derivative metabolic process 4
GO:1901607 alpha-amino acid biosynthetic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902979 mitotic DNA replication termination 4
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000653 regulation of genetic imprinting 2
GO:2001253 regulation of histone H3-K36 trimethylation 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001