Functional clusters

Information

  • Type Gene Ontology
  • Description proteolysis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 3 CH_ath_394 7 13 0.0000676005
Brassica napus C03 3 CH_bna_188 8 9 0.00000014419
Carpinus fangiana scaffold12 3 CH_cfa_244 5 5 0.000169471
Magnolia biondii Chr19 3 CH_mbi_261 8 13 0.000000811268
Papaver somniferum NC_039358.1 3 CH_pso_301 13 55 0.000000688974
Sechium edule LG05 3 CH_sed_188 8 16 0.0000965571
Arabidopsis thaliana Chr2 4 CH_ath_394 7 13 0.0000676005
Brassica napus C03 4 CH_bna_188 8 9 0.00000014419
Carpinus fangiana scaffold12 4 CH_cfa_244 5 5 0.000169471
Magnolia biondii Chr19 4 CH_mbi_261 8 13 0.000000811268
Papaver somniferum NC_039358.1 4 CH_pso_301 13 55 0.000000688974
Sechium edule LG05 4 CH_sed_188 8 16 0.0000965571

Available child term results

Ontology identifier Description Number of clusters
GO:0006465 signal peptide processing 14
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006624 vacuolar protein processing 18
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0010466 negative regulation of peptidase activity 14
GO:0010498 proteasomal protein catabolic process 2
GO:0010951 negative regulation of endopeptidase activity 28
GO:0016485 protein processing 4
GO:0016540 protein autoprocessing 18
GO:0016579 protein deubiquitination 2
GO:0016598 protein arginylation 2
GO:0030327 prenylated protein catabolic process 12
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0031293 membrane protein intracellular domain proteolysis 2
GO:0034982 mitochondrial protein processing 2
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0071108 protein K48-linked deubiquitination 4
GO:0071586 CAAX-box protein processing 14
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0097264 self proteolysis 12
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12
GO:2000117 negative regulation of cysteine-type endopeptidase activity 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001