Functional clusters

Information

  • Type Gene Ontology
  • Description cell wall polysaccharide metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_7 3 CH_aly_188 4 5 0.0000503713
Brassica carinata ChrC09 3 CH_bca_414 4 4 0.00000893758
Brassica carinata ChrB03 3 CH_bca_415 4 4 0.00000893758
Brassica carinata Contig1006 3 CH_bca_514 4 5 0.0000445766
Brassica napus A01 3 CH_bna_330 4 4 0.0000095378
Brassica napus C01 3 CH_bna_331 4 4 0.0000095378
Brassica napus C03 3 CH_bna_332 4 4 0.0000095378
Brassica napus A08 3 CH_bna_420 4 5 0.0000475724
Brassica oleracea C3 3 CH_bol_198 4 4 0.00000539507
Brassica oleracea C1 3 CH_bol_303 4 7 0.000187451
Brassica rapa A08 3 CH_bra_169 4 5 0.0000478483
Brassica rapa A03 3 CH_bra_208 4 6 0.000143113
Cardamine hirsuta Chr7 3 CH_chi_180 4 4 0.0000112544
Arabidopsis lyrata scaffold_7 4 CH_aly_188 4 5 0.0000503713
Brassica carinata ChrC09 4 CH_bca_414 4 4 0.00000893758
Brassica carinata ChrB03 4 CH_bca_415 4 4 0.00000893758
Brassica carinata Contig1006 4 CH_bca_514 4 5 0.0000445766
Brassica napus A01 4 CH_bna_330 4 4 0.0000095378
Brassica napus C01 4 CH_bna_331 4 4 0.0000095378
Brassica napus C03 4 CH_bna_332 4 4 0.0000095378
Brassica napus A08 4 CH_bna_420 4 5 0.0000475724
Brassica oleracea C3 4 CH_bol_198 4 4 0.00000539507
Brassica oleracea C1 4 CH_bol_303 4 7 0.000187451
Brassica rapa A08 4 CH_bra_169 4 5 0.0000478483
Brassica rapa A03 4 CH_bra_208 4 6 0.000143113
Cardamine hirsuta Chr7 4 CH_chi_180 4 4 0.0000112544

Available child term results

Ontology identifier Description Number of clusters
GO:0009969 xyloglucan biosynthetic process 4
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010412 mannan metabolic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0045492 xylan biosynthetic process 18
GO:0045493 xylan catabolic process 76
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:1990937 xylan acetylation 10
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001