Functional clusters

Information

  • Type Gene Ontology
  • Description cellular protein metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00029 3 CH_atr_237 17 46 0.000228416
Brassica carinata Contig525 3 CH_bca_666 10 13 0.000185516
Brassica rapa A10 3 CH_bra_185 12 16 0.000103646
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_155 26 80 0.00000104542
Eucalyptus grandis Chr03 3 CH_egr_541 30 75 0.00000201333
Helianthus annuus HanXRQChr14 3 CH_han_421 18 35 0.0000259262
Magnolia biondii Chr04 3 CH_mbi_570 19 63 0.000408152
Malus domestica Chr04 3 CH_mdo_343 10 11 0.0000114556
Manihot esculenta Chromosome07 3 CH_mes_373 9 10 0.000404198
Oryza sativa ssp. japonica chr01 3 CH_osa_151 30 70 0.000000173859
Quercus lobata 7 3 CH_qlo_590 13 16 0.00000502514
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_207 18 29 0.00000000402363
Amborella trichopoda AmTr_v1.0_scaffold00029 4 CH_atr_237 17 46 0.000228416
Brassica carinata Contig525 4 CH_bca_666 10 13 0.000185516
Brassica rapa A10 4 CH_bra_185 12 16 0.000103646
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_155 26 80 0.00000104542
Eucalyptus grandis Chr03 4 CH_egr_541 30 75 0.00000201333
Helianthus annuus HanXRQChr14 4 CH_han_421 18 35 0.0000259262
Magnolia biondii Chr04 4 CH_mbi_570 19 63 0.000408152
Malus domestica Chr04 4 CH_mdo_343 10 11 0.0000114556
Manihot esculenta Chromosome07 4 CH_mes_373 9 10 0.000404198
Oryza sativa ssp. japonica chr01 4 CH_osa_151 30 70 0.000000173859
Quercus lobata 7 4 CH_qlo_590 13 16 0.00000502514
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_207 18 29 0.00000000402363

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 14
GO:0000209 protein polyubiquitination 74
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000413 protein peptidyl-prolyl isomerization 26
GO:0001731 formation of translation preinitiation complex 14
GO:0002084 protein depalmitoylation 6
GO:0002182 cytoplasmic translational elongation 20
GO:0006412 translation 8
GO:0006413 translational initiation 8
GO:0006414 translational elongation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 8
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006464 cellular protein modification process 56
GO:0006465 signal peptide processing 14
GO:0006468 protein phosphorylation 824
GO:0006470 protein dephosphorylation 2
GO:0006471 protein ADP-ribosylation 2
GO:0006479 protein methylation 2
GO:0006480 N-terminal protein amino acid methylation 10
GO:0006486 protein glycosylation 86
GO:0006487 protein N-linked glycosylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006493 protein O-linked glycosylation 2
GO:0006499 N-terminal protein myristoylation 4
GO:0006506 GPI anchor biosynthetic process 14
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006624 vacuolar protein processing 18
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 2
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 20
GO:0009249 protein lipoylation 2
GO:0010206 photosystem II repair 2
GO:0010304 PSII associated light-harvesting complex II catabolic process 2
GO:0010390 histone monoubiquitination 20
GO:0010466 negative regulation of peptidase activity 14
GO:0010498 proteasomal protein catabolic process 2
GO:0010731 protein glutathionylation 56
GO:0010951 negative regulation of endopeptidase activity 28
GO:0016255 attachment of GPI anchor to protein 14
GO:0016567 protein ubiquitination 136
GO:0016573 histone acetylation 4
GO:0016575 histone deacetylation 8
GO:0016579 protein deubiquitination 2
GO:0016598 protein arginylation 2
GO:0017003 protein-heme linkage 4
GO:0017009 protein-phycocyanobilin linkage 14
GO:0017014 protein nitrosylation 10
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase 24
GO:0017196 N-terminal peptidyl-methionine acetylation 12
GO:0018023 peptidyl-lysine trimethylation 2
GO:0018108 peptidyl-tyrosine phosphorylation 6
GO:0018117 protein adenylylation 2
GO:0018142 protein-DNA covalent cross-linking 16
GO:0018171 peptidyl-cysteine oxidation 6
GO:0018193 peptidyl-amino acid modification 2
GO:0018205 peptidyl-lysine modification 6
GO:0018215 protein phosphopantetheinylation 8
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0018283 iron incorporation into metallo-sulfur cluster 6
GO:0018298 protein-chromophore linkage 2
GO:0018316 peptide cross-linking via L-cystine 2
GO:0018343 protein farnesylation 2
GO:0018345 protein palmitoylation 2
GO:0019988 charged-tRNA amino acid modification 12
GO:0030327 prenylated protein catabolic process 12
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0031365 N-terminal protein amino acid modification 10
GO:0031396 regulation of protein ubiquitination 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0032147 activation of protein kinase activity 10
GO:0032268 regulation of cellular protein metabolic process 4
GO:0032269 negative regulation of cellular protein metabolic process 2
GO:0032324 molybdopterin cofactor biosynthetic process 4
GO:0032447 protein urmylation 2
GO:0032543 mitochondrial translation 8
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033234 negative regulation of protein sumoylation 6
GO:0033523 histone H2B ubiquitination 2
GO:0034720 histone H3-K4 demethylation 8
GO:0034968 histone lysine methylation 2
GO:0034970 histone H3-R2 methylation 2
GO:0034982 mitochondrial protein processing 2
GO:0035065 regulation of histone acetylation 6
GO:0035246 peptidyl-arginine N-methylation 2
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035606 peptidyl-cysteine S-trans-nitrosylation 26
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0035970 peptidyl-threonine dephosphorylation 2
GO:0036066 protein O-linked fucosylation 14
GO:0036123 histone H3-K9 dimethylation 2
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043543 protein acylation 4
GO:0043666 regulation of phosphoprotein phosphatase activity 4
GO:0043686 co-translational protein modification 4
GO:0043967 histone H4 acetylation 6
GO:0043968 histone H2A acetylation 10
GO:0043970 histone H3-K9 acetylation 4
GO:0043971 histone H3-K18 acetylation 56
GO:0043981 histone H4-K5 acetylation 2
GO:0043984 histone H4-K16 acetylation 2
GO:0043985 histone H4-R3 methylation 2
GO:0043987 histone H3-S10 phosphorylation 2
GO:0044257 cellular protein catabolic process 2
GO:0045116 protein neddylation 2
GO:0045727 positive regulation of translation 18
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0046777 protein autophosphorylation 12
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0070262 peptidyl-serine dephosphorylation 24
GO:0070534 protein K63-linked ubiquitination 10
GO:0070544 histone H3-K36 demethylation 4
GO:0070647 protein modification by small protein conjugation or removal 2
GO:0070932 histone H3 deacetylation 2
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0071108 protein K48-linked deubiquitination 4
GO:0071586 CAAX-box protein processing 14
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0071900 regulation of protein serine/threonine kinase activity 8
GO:0072344 rescue of stalled ribosome 12
GO:0080058 protein deglutathionylation 4
GO:0080149 sucrose induced translational repression 2
GO:0080163 regulation of protein serine/threonine phosphatase activity 6
GO:0090042 tubulin deacetylation 6
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0097167 circadian regulation of translation 4
GO:0098532 histone H3-K27 trimethylation 4
GO:1900109 regulation of histone H3-K9 dimethylation 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1902464 regulation of histone H3-K27 trimethylation 8
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1904380 endoplasmic reticulum mannose trimming 14
GO:1904667 negative regulation of ubiquitin protein ligase activity 8
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:1905435 regulation of histone H3-K4 trimethylation 4
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12
GO:1990164 histone H2A phosphorylation 8
GO:2000117 negative regulation of cysteine-type endopeptidase activity 2
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001