Functional clusters
Information
- Type Gene Ontology
- Description protein glycosylation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 3 | CH_acertr_477 | 4 | 8 | 0.000616822 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 3 | CH_amhyb_90 | 4 | 5 | 0.0000322168 |
| Camellia sinensis var. sinensis | Chr14 | 3 | CH_camsi_764 | 5 | 16 | 0.000494507 |
| Camellia sinensis var. sinensis | Chr12 | 3 | CH_camsi_838 | 4 | 7 | 0.000850187 |
| Camellia sinensis var. sinensis | Chr7 | 3 | CH_camsi_90 | 8 | 11 | 0.00000000000209156 |
| Cannabis sativa | NC_044377.1 | 3 | CH_cansat_76 | 6 | 7 | 0.000000000944067 |
| Coffea canephora | chr7 | 3 | CH_ccan_131 | 5 | 55 | 0.00000262513 |
| Coffea canephora | chr8 | 3 | CH_ccan_157 | 4 | 18 | 0.00000854217 |
| Fragaria x ananassa | Fvb4-2 | 3 | CH_fan_376 | 4 | 5 | 0.000100563 |
| Fragaria x ananassa | Fvb1-3 | 3 | CH_fan_441 | 4 | 6 | 0.000300801 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_225 | 4 | 5 | 0.000023471 |
| Glycine max | Gm17 | 3 | CH_gma_156 | 5 | 5 | 0.0000000764782 |
| Glycine max | Gm13 | 3 | CH_gma_255 | 4 | 4 | 0.0000179894 |
| Glycine max | Gm06 | 3 | CH_gma_256 | 4 | 4 | 0.0000179894 |
| Hydrangea macrophylla | Hma1.2p1_0945F.1 | 3 | CH_hma_127 | 4 | 6 | 0.0000470203 |
| Lupinus albus | Lalb_Chr13 | 3 | CH_lal_44 | 7 | 7 | 0.00000000000145401 |
| Lotus japonicus | chr4 | 3 | CH_lja_91 | 5 | 5 | 0.0000000479019 |
| Lonicera japonica | GWHAAZE00000007 | 3 | CH_lonja_472 | 4 | 6 | 0.000252257 |
| Magnolia biondii | Chr12 | 3 | CH_mbi_627 | 3 | 3 | 0.000589622 |
| Malus domestica | Chr15 | 3 | CH_mdo_348 | 4 | 4 | 0.0000126365 |
| Oryza sativa ssp. japonica | chr10 | 3 | CH_osa_265 | 4 | 5 | 0.0000378466 |
| Prunus persica | Pp01 | 3 | CH_ppe_174 | 6 | 10 | 0.0000000287135 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_284 | 5 | 7 | 0.00000044807 |
| Populus trichocarpa | Chr06 | 3 | CH_ptr_188 | 5 | 5 | 0.0000000731452 |
| Phaseolus vulgaris | Chr03 | 3 | CH_pvu_186 | 4 | 4 | 0.00000913186 |
| Quercus lobata | CM012294 | 3 | CH_qlo_391 | 5 | 5 | 0.000000024746 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_513 | 4 | 6 | 0.000041059 |
| Rhododendron simsii | chr10 | 3 | CH_rsi_15 | 16 | 22 | 1.24938e-28 |
| Rhododendron simsii | chr06 | 3 | CH_rsi_216 | 6 | 11 | 0.000000183907 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_309 | 4 | 4 | 0.0000176952 |
| Salix brachista | GWHAAZH00000007 | 3 | CH_sbr_69 | 6 | 6 | 0.000000000219115 |
| Simmondsia chinensis | GWHAASQ00000012 | 3 | CH_sci_113 | 4 | 4 | 0.000011091 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_1163 | 4 | 7 | 0.000169156 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_597 | 5 | 6 | 0.0000000944331 |
| Sapria himalayana | scaffold56_3489501 | 3 | CH_shi_174 | 4 | 10 | 0.0000790718 |
| Trochodendron aralioides | group10 | 3 | CH_tar_474 | 4 | 7 | 0.000668667 |
| Tripterygium wilfordii | NC_052250.1 | 3 | CH_twi_176 | 4 | 4 | 0.0000187754 |
| Tripterygium wilfordii | NC_052239.1 | 3 | CH_twi_25 | 8 | 9 | 0.0000000000000802269 |
| Vigna mungo | CM024074.1 | 3 | CH_vmu_131 | 4 | 4 | 0.0000060004 |
| Vitis vinifera | chr11 | 3 | CH_vvi_212 | 4 | 4 | 0.00000850142 |
| Vitis vinifera | chr1 | 3 | CH_vvi_288 | 6 | 31 | 0.0000975994 |
| Zea mays | 1 | 3 | CH_zma_101 | 5 | 5 | 0.000000178672 |
| Zea mays | 1 | 3 | CH_zma_177 | 4 | 4 | 0.0000334365 |
| Acer truncatum | chr7 | 4 | CH_acertr_477 | 4 | 8 | 0.000616822 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 4 | CH_amhyb_90 | 4 | 5 | 0.0000322168 |
| Camellia sinensis var. sinensis | Chr14 | 4 | CH_camsi_764 | 5 | 16 | 0.000494507 |
| Camellia sinensis var. sinensis | Chr12 | 4 | CH_camsi_838 | 4 | 7 | 0.000850187 |
| Camellia sinensis var. sinensis | Chr7 | 4 | CH_camsi_90 | 8 | 11 | 0.00000000000209156 |
| Cannabis sativa | NC_044377.1 | 4 | CH_cansat_76 | 6 | 7 | 0.000000000944067 |
| Coffea canephora | chr7 | 4 | CH_ccan_131 | 5 | 55 | 0.00000262513 |
| Coffea canephora | chr8 | 4 | CH_ccan_157 | 4 | 18 | 0.00000854217 |
| Fragaria x ananassa | Fvb4-2 | 4 | CH_fan_376 | 4 | 5 | 0.000100563 |
| Fragaria x ananassa | Fvb1-3 | 4 | CH_fan_441 | 4 | 6 | 0.000300801 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_225 | 4 | 5 | 0.000023471 |
| Glycine max | Gm17 | 4 | CH_gma_156 | 5 | 5 | 0.0000000764782 |
| Glycine max | Gm13 | 4 | CH_gma_255 | 4 | 4 | 0.0000179894 |
| Glycine max | Gm06 | 4 | CH_gma_256 | 4 | 4 | 0.0000179894 |
| Hydrangea macrophylla | Hma1.2p1_0945F.1 | 4 | CH_hma_127 | 4 | 6 | 0.0000470203 |
| Lupinus albus | Lalb_Chr13 | 4 | CH_lal_44 | 7 | 7 | 0.00000000000145401 |
| Lotus japonicus | chr4 | 4 | CH_lja_91 | 5 | 5 | 0.0000000479019 |
| Lonicera japonica | GWHAAZE00000007 | 4 | CH_lonja_472 | 4 | 6 | 0.000252257 |
| Magnolia biondii | Chr12 | 4 | CH_mbi_627 | 3 | 3 | 0.000589622 |
| Malus domestica | Chr15 | 4 | CH_mdo_348 | 4 | 4 | 0.0000126365 |
| Oryza sativa ssp. japonica | chr10 | 4 | CH_osa_265 | 4 | 5 | 0.0000378466 |
| Prunus persica | Pp01 | 4 | CH_ppe_174 | 6 | 10 | 0.0000000287135 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_284 | 5 | 7 | 0.00000044807 |
| Populus trichocarpa | Chr06 | 4 | CH_ptr_188 | 5 | 5 | 0.0000000731452 |
| Phaseolus vulgaris | Chr03 | 4 | CH_pvu_186 | 4 | 4 | 0.00000913186 |
| Quercus lobata | CM012294 | 4 | CH_qlo_391 | 5 | 5 | 0.000000024746 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_513 | 4 | 6 | 0.000041059 |
| Rhododendron simsii | chr10 | 4 | CH_rsi_15 | 16 | 22 | 1.24938e-28 |
| Rhododendron simsii | chr06 | 4 | CH_rsi_216 | 6 | 11 | 0.000000183907 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_309 | 4 | 4 | 0.0000176952 |
| Salix brachista | GWHAAZH00000007 | 4 | CH_sbr_69 | 6 | 6 | 0.000000000219115 |
| Simmondsia chinensis | GWHAASQ00000012 | 4 | CH_sci_113 | 4 | 4 | 0.000011091 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_1163 | 4 | 7 | 0.000169156 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_597 | 5 | 6 | 0.0000000944331 |
| Sapria himalayana | scaffold56_3489501 | 4 | CH_shi_174 | 4 | 10 | 0.0000790718 |
| Trochodendron aralioides | group10 | 4 | CH_tar_474 | 4 | 7 | 0.000668667 |
| Tripterygium wilfordii | NC_052250.1 | 4 | CH_twi_176 | 4 | 4 | 0.0000187754 |
| Tripterygium wilfordii | NC_052239.1 | 4 | CH_twi_25 | 8 | 9 | 0.0000000000000802269 |
| Vigna mungo | CM024074.1 | 4 | CH_vmu_131 | 4 | 4 | 0.0000060004 |
| Vitis vinifera | chr11 | 4 | CH_vvi_212 | 4 | 4 | 0.00000850142 |
| Vitis vinifera | chr1 | 4 | CH_vvi_288 | 6 | 31 | 0.0000975994 |
| Zea mays | 1 | 4 | CH_zma_101 | 5 | 5 | 0.000000178672 |
| Zea mays | 1 | 4 | CH_zma_177 | 4 | 4 | 0.0000334365 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006487 | protein N-linked glycosylation | 2 |
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | 4 |
| GO:0006493 | protein O-linked glycosylation | 2 |
| GO:0018279 | protein N-linked glycosylation via asparagine | 2 |
| GO:0036066 | protein O-linked fucosylation | 14 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |