Functional clusters

Information

  • Type Gene Ontology
  • Description RNA modification

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 3 CH_acertr_270 6 21 0.0000360616
Manihot esculenta Chromosome07 3 CH_mes_219 5 6 0.00000395781
Prunus persica Pp01 3 CH_ppe_414 7 53 0.000430884
Acer truncatum chr2 4 CH_acertr_270 6 21 0.0000360616
Manihot esculenta Chromosome07 4 CH_mes_219 5 6 0.00000395781
Prunus persica Pp01 4 CH_ppe_414 7 53 0.000430884

Available child term results

Ontology identifier Description Number of clusters
GO:0000154 rRNA modification 10
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0001510 RNA methylation 4
GO:0002100 tRNA wobble adenosine to inosine editing 4
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 24
GO:0002949 tRNA threonylcarbamoyladenosine modification 8
GO:0006400 tRNA modification 14
GO:0016554 cytidine to uridine editing 14
GO:0019988 charged-tRNA amino acid modification 12
GO:0030488 tRNA methylation 2
GO:0031119 tRNA pseudouridine synthesis 10
GO:0034227 tRNA thio-modification 12
GO:0035600 tRNA methylthiolation 2
GO:0036265 RNA (guanine-N7)-methylation 4
GO:0061715 miRNA 2'-O-methylation 6
GO:0080009 mRNA methylation 12
GO:0080156 mitochondrial mRNA modification 10
GO:0080178 5-carbamoylmethyl uridine residue modification 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:1900865 chloroplast RNA modification 8
GO:1900871 chloroplast mRNA modification 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001