Functional clusters

Information

  • Type Gene Ontology
  • Description gene silencing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsella rubella scaffold_4 3 CH_cru_317 8 71 0.00058707
Salvia bowleyana GWHASIU00000002 3 CH_sbo_489 7 70 0.000754996
Capsella rubella scaffold_4 4 CH_cru_317 8 71 0.00058707
Salvia bowleyana GWHASIU00000002 4 CH_sbo_489 7 70 0.000754996

Available child term results

Ontology identifier Description Number of clusters
GO:0006342 chromatin silencing 16
GO:0006348 chromatin silencing at telomere 6
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0030422 production of siRNA involved in RNA interference 2
GO:0031047 gene silencing by RNA 4
GO:0031054 pre-miRNA processing 2
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0035194 post-transcriptional gene silencing by RNA 2
GO:0035195 gene silencing by miRNA 4
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0060966 regulation of gene silencing by RNA 2
GO:0060968 regulation of gene silencing 4
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA 2
GO:0080188 gene silencing by RNA-directed DNA methylation 42
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:1900368 regulation of RNA interference 2
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 22
GO:2000636 positive regulation of primary miRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001