Functional clusters

Information

  • Type Gene Ontology
  • Description ncRNA metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB06 3 CH_bca_618 4 5 0.000126221
Magnolia biondii Chr04 3 CH_mbi_369 8 77 0.0000233031
Phaseolus vulgaris Chr10 3 CH_pvu_313 4 6 0.000419928
Brassica carinata ChrB06 4 CH_bca_618 4 5 0.000126221
Magnolia biondii Chr04 4 CH_mbi_369 8 77 0.0000233031
Phaseolus vulgaris Chr10 4 CH_pvu_313 4 6 0.000419928

Available child term results

Ontology identifier Description Number of clusters
GO:0000154 rRNA modification 10
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0000495 box H/ACA RNA 3'-end processing 2
GO:0002100 tRNA wobble adenosine to inosine editing 4
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 24
GO:0002949 tRNA threonylcarbamoyladenosine modification 8
GO:0006364 rRNA processing 10
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 8
GO:0006400 tRNA modification 14
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0008033 tRNA processing 2
GO:0010586 miRNA metabolic process 2
GO:0016075 rRNA catabolic process 6
GO:0016180 snRNA processing 6
GO:0019988 charged-tRNA amino acid modification 12
GO:0030488 tRNA methylation 2
GO:0031054 pre-miRNA processing 2
GO:0031119 tRNA pseudouridine synthesis 10
GO:0034227 tRNA thio-modification 12
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 4
GO:0034472 snRNA 3'-end processing 2
GO:0034477 U6 snRNA 3'-end processing 8
GO:0034587 piRNA metabolic process 2
GO:0035600 tRNA methylthiolation 2
GO:0042779 tRNA 3'-trailer cleavage 4
GO:0042868 antisense RNA metabolic process 4
GO:0043039 tRNA aminoacylation 6
GO:0043144 sno(s)RNA processing 4
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0061715 miRNA 2'-O-methylation 6
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0072684 mitochondrial tRNA 3'-trailer cleavage, endonucleolytic 2
GO:0080178 5-carbamoylmethyl uridine residue modification 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:2000636 positive regulation of primary miRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001