Functional clusters

Information

  • Type Gene Ontology
  • Description carboxylic acid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr15 3 CH_camsi_841 4 6 0.000889624
Lactuca sativa Lsat_1_v8_lg_2 3 CH_lsa_345 6 18 0.000069535
Selenicereus undatus Scaffold_33673 3 CH_sun_214 5 15 0.000627521
Camellia sinensis var. sinensis Chr15 4 CH_camsi_841 4 6 0.000889624
Lactuca sativa Lsat_1_v8_lg_2 4 CH_lsa_345 6 18 0.000069535
Selenicereus undatus Scaffold_33673 4 CH_sun_214 5 15 0.000627521

Available child term results

Ontology identifier Description Number of clusters
GO:0000162 tryptophan biosynthetic process 2
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006529 asparagine biosynthetic process 14
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006537 glutamate biosynthetic process 10
GO:0006542 glutamine biosynthetic process 8
GO:0006571 tyrosine biosynthetic process 4
GO:0006592 ornithine biosynthetic process 12
GO:0006633 fatty acid biosynthetic process 46
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0006780 uroporphyrinogen III biosynthetic process 4
GO:0009070 serine family amino acid biosynthetic process 4
GO:0009089 lysine biosynthetic process via diaminopimelate 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009099 valine biosynthetic process 2
GO:0009423 chorismate biosynthetic process 2
GO:0009684 indoleacetic acid biosynthetic process 2
GO:0009695 jasmonic acid biosynthetic process 4
GO:0009697 salicylic acid biosynthetic process 28
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0019264 glycine biosynthetic process from serine 14
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0030418 nicotianamine biosynthetic process 38
GO:0030497 fatty acid elongation 6
GO:0031408 oxylipin biosynthetic process 24
GO:0033481 galacturonate biosynthetic process 2
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 16
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0046656 folic acid biosynthetic process 2
GO:0070179 D-serine biosynthetic process 40
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0080142 regulation of salicylic acid biosynthetic process 10
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:1901607 alpha-amino acid biosynthetic process 2
GO:1901747 prephenate(2-) biosynthetic process 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001