Functional clusters
Information
- Type Gene Ontology
- Description pyrimidine-containing compound metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Vanilla planifolia | CM028162.1 | 3 | CH_vpl_278 | 3 | 3 | 0.000239623 |
Vanilla planifolia | CM028162.1 | 4 | CH_vpl_278 | 3 | 3 | 0.000239623 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0006210 | thymine catabolic process | 10 |
GO:0006223 | uracil salvage | 2 |
GO:0006226 | dUMP biosynthetic process | 6 |
GO:0006228 | UTP biosynthetic process | 2 |
GO:0006231 | dTMP biosynthetic process | 2 |
GO:0006233 | dTDP biosynthetic process | 4 |
GO:0009221 | pyrimidine deoxyribonucleotide biosynthetic process | 2 |
GO:0009228 | thiamine biosynthetic process | 4 |
GO:0009229 | thiamine diphosphate biosynthetic process | 2 |
GO:0009972 | cytidine deamination | 8 |
GO:0044205 | 'de novo' UMP biosynthetic process | 2 |
GO:0046104 | thymidine metabolic process | 4 |
GO:0046109 | uridine biosynthetic process | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |