Functional clusters

Information

  • Type Gene Ontology
  • Description pyrimidine-containing compound metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Vanilla planifolia CM028162.1 3 CH_vpl_278 3 3 0.000239623
Vanilla planifolia CM028162.1 4 CH_vpl_278 3 3 0.000239623

Available child term results

Ontology identifier Description Number of clusters
GO:0006210 thymine catabolic process 10
GO:0006223 uracil salvage 2
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009228 thiamine biosynthetic process 4
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009972 cytidine deamination 8
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0046104 thymidine metabolic process 4
GO:0046109 uridine biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001