Functional clusters

Information

  • Type Gene Ontology
  • Description mitochondrial mRNA 5'-end processing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group3 3 CH_ach_49 3 6 0.000000354055
Arabidopsis lyrata scaffold_2 3 CH_aly_53 5 32 0.000000000600674
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 3 CH_arhy_1 30 74 7.87905e-65
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 3 CH_arhy_144 7 17 0.00000000000494513
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 3 CH_arhy_5 24 73 4.85532e-48
Beta vulgaris Chr4_EL10_PGA_scaffold1 3 CH_bvu_55 6 60 0.00000000200135
Coffea canephora chr7 3 CH_ccan_14 6 69 0.000000000000254536
Carya illinoinensis Chr08 3 CH_cil_45 7 18 1.13671e-18
Chenopodium quinoa C_Quinoa_Scaffold_2088 3 CH_cqu_350 3 12 0.0000887883
Durio zibethinus NW_019167926.1 3 CH_dzi_150 3 8 0.00000360773
Erigeron canadensis Conyza_canadensis_scaffold:2 3 CH_eca_458 2 4 0.00080764
Eucalyptus grandis Chr01 3 CH_egr_38 12 44 2.47123e-28
Erythranthe guttata scaffold_7 3 CH_egut_2 23 52 1.59567e-54
Eutrema salsugineum scaffold_8 3 CH_esa_22 8 63 0.0000000000000198858
Glycine max Gm16 3 CH_gma_40 7 50 0.0000000000000428076
Gossypium raimondii Chr09 3 CH_gra_131 4 26 0.000000241406
Helianthus annuus HanXRQChr07 3 CH_han_124 5 11 0.0000000000337133
Helianthus annuus HanXRQChr07 3 CH_han_488 4 50 0.0000718831
Magnolia biondii Chr11 3 CH_mbi_227 3 5 0.000000353765
Manihot esculenta Chromosome13 3 CH_mes_127 8 29 0.00000000142306
Manihot esculenta Chromosome09 3 CH_mes_3 30 40 1.12008e-63
Manihot esculenta Chromosome09 3 CH_mes_5 30 42 1.45437e-62
Manihot esculenta Chromosome09 3 CH_mes_8 30 50 6.08347e-59
Petunia axillaris Peaxi162Scf00154 3 CH_pax_1 8 11 3.9936e-24
Prunus persica Pp06 3 CH_ppe_101 6 36 0.00000000000846387
Papaver somniferum NC_039358.1 3 CH_pso_109 6 17 0.0000000000052547
Papaver somniferum NC_039364.1 3 CH_pso_329 4 13 0.00000201165
Papaver somniferum NW_020620714.1 3 CH_pso_48 8 27 1.26012e-16
Quercus lobata 3 3 CH_qlo_96 9 28 2.29866e-18
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_651 3 27 0.000243586
Salvia bowleyana GWHASIU00000006 3 CH_sbo_2 25 77 3.96154e-58
Solanum lycopersicum SL4.0ch06 3 CH_sly_532 2 2 0.000586941
Solanum tuberosum ST4.03ch04 3 CH_stu_569 2 2 0.000512453
Trochodendron aralioides group2 3 CH_tar_195 3 11 0.00000356696
Tarenaya hassleriana NW_010968045.1 3 CH_tha_35 4 4 0.0000000242825
Tripterygium wilfordii NC_052240.1 3 CH_twi_59 5 34 0.00000000112903
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_30 7 33 0.000000000000370479
Actinidia chinensis Lachesis_group3 4 CH_ach_49 3 6 0.000000354055
Arabidopsis lyrata scaffold_2 4 CH_aly_53 5 32 0.000000000600674
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 4 CH_arhy_1 30 74 7.87905e-65
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 4 CH_arhy_144 7 17 0.00000000000494513
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 4 CH_arhy_5 24 73 4.85532e-48
Beta vulgaris Chr4_EL10_PGA_scaffold1 4 CH_bvu_55 6 60 0.00000000200135
Coffea canephora chr7 4 CH_ccan_14 6 69 0.000000000000254536
Carya illinoinensis Chr08 4 CH_cil_45 7 18 1.13671e-18
Chenopodium quinoa C_Quinoa_Scaffold_2088 4 CH_cqu_350 3 12 0.0000887883
Durio zibethinus NW_019167926.1 4 CH_dzi_150 3 8 0.00000360773
Erigeron canadensis Conyza_canadensis_scaffold:2 4 CH_eca_458 2 4 0.00080764
Eucalyptus grandis Chr01 4 CH_egr_38 12 44 2.47123e-28
Erythranthe guttata scaffold_7 4 CH_egut_2 23 52 1.59567e-54
Eutrema salsugineum scaffold_8 4 CH_esa_22 8 63 0.0000000000000198858
Glycine max Gm16 4 CH_gma_40 7 50 0.0000000000000428076
Gossypium raimondii Chr09 4 CH_gra_131 4 26 0.000000241406
Helianthus annuus HanXRQChr07 4 CH_han_124 5 11 0.0000000000337133
Helianthus annuus HanXRQChr07 4 CH_han_488 4 50 0.0000718831
Magnolia biondii Chr11 4 CH_mbi_227 3 5 0.000000353765
Manihot esculenta Chromosome13 4 CH_mes_127 8 29 0.00000000142306
Manihot esculenta Chromosome09 4 CH_mes_3 30 40 1.12008e-63
Manihot esculenta Chromosome09 4 CH_mes_5 30 42 1.45437e-62
Manihot esculenta Chromosome09 4 CH_mes_8 30 50 6.08347e-59
Petunia axillaris Peaxi162Scf00154 4 CH_pax_1 8 11 3.9936e-24
Prunus persica Pp06 4 CH_ppe_101 6 36 0.00000000000846387
Papaver somniferum NC_039358.1 4 CH_pso_109 6 17 0.0000000000052547
Papaver somniferum NC_039364.1 4 CH_pso_329 4 13 0.00000201165
Papaver somniferum NW_020620714.1 4 CH_pso_48 8 27 1.26012e-16
Quercus lobata 3 4 CH_qlo_96 9 28 2.29866e-18
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_651 3 27 0.000243586
Salvia bowleyana GWHASIU00000006 4 CH_sbo_2 25 77 3.96154e-58
Solanum lycopersicum SL4.0ch06 4 CH_sly_532 2 2 0.000586941
Solanum tuberosum ST4.03ch04 4 CH_stu_569 2 2 0.000512453
Trochodendron aralioides group2 4 CH_tar_195 3 11 0.00000356696
Tarenaya hassleriana NW_010968045.1 4 CH_tha_35 4 4 0.0000000242825
Tripterygium wilfordii NC_052240.1 4 CH_twi_59 5 34 0.00000000112903
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_30 7 33 0.000000000000370479

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001