Functional clusters

Information

  • Type Gene Ontology
  • Description polysaccharide biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_270 5 12 0.000243548
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_270 5 12 0.000243548

Available child term results

Ontology identifier Description Number of clusters
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 38
GO:0009250 glucan biosynthetic process 4
GO:0009969 xyloglucan biosynthetic process 4
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0010581 regulation of starch biosynthetic process 4
GO:0019252 starch biosynthetic process 2
GO:0030244 cellulose biosynthetic process 10
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0035884 arabinan biosynthetic process 6
GO:0045489 pectin biosynthetic process 10
GO:0045492 xylan biosynthetic process 18
GO:0048358 mucilage pectin biosynthetic process 4
GO:0051070 galactomannan biosynthetic process 8
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:1900030 regulation of pectin biosynthetic process 2
GO:2001006 regulation of cellulose biosynthetic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001