Functional clusters

Information

  • Type Gene Ontology
  • Description carbohydrate metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr9 3 CH_acertr_265 6 6 0.0000333291
Acer truncatum chr11 3 CH_acertr_271 7 9 0.0000366636
Brassica napus A09 3 CH_bna_405 6 6 0.0000313431
Brassica oleracea C3 3 CH_bol_349 7 13 0.00045595
Brassica oleracea C8 3 CH_bol_393 7 14 0.000892622
Camellia sinensis var. sinensis Chr1 3 CH_camsi_398 7 8 0.00000617059
Camellia sinensis var. sinensis Chr3 3 CH_camsi_844 5 5 0.000931164
Cannabis sativa NC_044374.1 3 CH_cansat_182 7 10 0.000032616
Cannabis sativa NC_044376.1 3 CH_cansat_337 9 27 0.000622943
Capsicum annuum PGAv.1.6.scaffold65 3 CH_can_222 7 8 0.00000440037
Coffea canephora chr3 3 CH_ccan_196 7 62 0.000028433
Carpinus fangiana Cfa01 3 CH_cfa_242 6 7 0.000150505
Davidia involucrata GWHABJS00000085 3 CH_din_336 12 47 0.000319315
Davidia involucrata GWHABJS00000085 3 CH_din_381 12 49 0.000534068
Eucalyptus grandis Chr01 3 CH_egr_873 5 5 0.00083393
Helianthus annuus HanXRQChr05 3 CH_han_299 7 7 0.000000570923
Lonicera japonica GWHAAZE00000006 3 CH_lonja_106 25 79 0.000000000000290347
Magnolia biondii Chr16 3 CH_mbi_336 7 9 0.000008807
Medicago truncatula chr1 3 CH_mtr_640 5 5 0.000274065
Olea europaea chr13 3 CH_oeu_153 11 35 0.000048538
Papaver somniferum NC_039363.1 3 CH_pso_366 7 10 0.00000845277
Phaseolus vulgaris Chr11 3 CH_pvu_315 6 7 0.0004261
Quercus lobata 4 3 CH_qlo_589 7 7 0.00000487219
Rhododendron simsii chr01 3 CH_rsi_117 21 71 0.0000000000775526
Salvia bowleyana GWHASIU00000007 3 CH_sbo_352 13 67 0.0000994636
Sequoiadendron giganteum chr7 3 CH_sgi_554 10 14 0.0000000366799
Sequoiadendron giganteum chr5 3 CH_sgi_824 17 75 0.00000649592
Solanum pennellii Spenn-ch06 3 CH_spe_204 6 6 0.00000360085
Theobroma cacao Chromosome_3 3 CH_tca_291 7 10 0.0000926584
Vigna mungo CM024072.1 3 CH_vmu_216 8 15 0.000186399
Acer truncatum chr9 4 CH_acertr_265 6 6 0.0000333291
Acer truncatum chr11 4 CH_acertr_271 7 9 0.0000366636
Brassica napus A09 4 CH_bna_405 6 6 0.0000313431
Brassica oleracea C3 4 CH_bol_349 7 13 0.00045595
Brassica oleracea C8 4 CH_bol_393 7 14 0.000892622
Camellia sinensis var. sinensis Chr1 4 CH_camsi_398 7 8 0.00000617059
Camellia sinensis var. sinensis Chr3 4 CH_camsi_844 5 5 0.000931164
Cannabis sativa NC_044374.1 4 CH_cansat_182 7 10 0.000032616
Cannabis sativa NC_044376.1 4 CH_cansat_337 9 27 0.000622943
Capsicum annuum PGAv.1.6.scaffold65 4 CH_can_222 7 8 0.00000440037
Coffea canephora chr3 4 CH_ccan_196 7 62 0.000028433
Carpinus fangiana Cfa01 4 CH_cfa_242 6 7 0.000150505
Davidia involucrata GWHABJS00000085 4 CH_din_336 12 47 0.000319315
Davidia involucrata GWHABJS00000085 4 CH_din_381 12 49 0.000534068
Eucalyptus grandis Chr01 4 CH_egr_873 5 5 0.00083393
Helianthus annuus HanXRQChr05 4 CH_han_299 7 7 0.000000570923
Lonicera japonica GWHAAZE00000006 4 CH_lonja_106 25 79 0.000000000000290347
Magnolia biondii Chr16 4 CH_mbi_336 7 9 0.000008807
Medicago truncatula chr1 4 CH_mtr_640 5 5 0.000274065
Olea europaea chr13 4 CH_oeu_153 11 35 0.000048538
Papaver somniferum NC_039363.1 4 CH_pso_366 7 10 0.00000845277
Phaseolus vulgaris Chr11 4 CH_pvu_315 6 7 0.0004261
Quercus lobata 4 4 CH_qlo_589 7 7 0.00000487219
Rhododendron simsii chr01 4 CH_rsi_117 21 71 0.0000000000775526
Salvia bowleyana GWHASIU00000007 4 CH_sbo_352 13 67 0.0000994636
Sequoiadendron giganteum chr7 4 CH_sgi_554 10 14 0.0000000366799
Sequoiadendron giganteum chr5 4 CH_sgi_824 17 75 0.00000649592
Solanum pennellii Spenn-ch06 4 CH_spe_204 6 6 0.00000360085
Theobroma cacao Chromosome_3 4 CH_tca_291 7 10 0.0000926584
Vigna mungo CM024072.1 4 CH_vmu_216 8 15 0.000186399

Available child term results

Ontology identifier Description Number of clusters
GO:0000024 maltose biosynthetic process 12
GO:0000025 maltose catabolic process 2
GO:0000271 polysaccharide biosynthetic process 2
GO:0000272 polysaccharide catabolic process 10
GO:0005976 polysaccharide metabolic process 8
GO:0005983 starch catabolic process 4
GO:0005985 sucrose metabolic process 4
GO:0005986 sucrose biosynthetic process 4
GO:0005987 sucrose catabolic process 4
GO:0005992 trehalose biosynthetic process 14
GO:0005993 trehalose catabolic process 4
GO:0005996 monosaccharide metabolic process 4
GO:0005997 xylulose metabolic process 12
GO:0006000 fructose metabolic process 16
GO:0006004 fucose metabolic process 4
GO:0006006 glucose metabolic process 12
GO:0006007 glucose catabolic process 16
GO:0006013 mannose metabolic process 70
GO:0006020 inositol metabolic process 2
GO:0006060 sorbitol metabolic process 26
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 38
GO:0006094 gluconeogenesis 4
GO:0006096 glycolytic process 20
GO:0006109 regulation of carbohydrate metabolic process 4
GO:0006110 regulation of glycolytic process 2
GO:0009250 glucan biosynthetic process 4
GO:0009251 glucan catabolic process 8
GO:0009969 xyloglucan biosynthetic process 4
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010383 cell wall polysaccharide metabolic process 26
GO:0010394 homogalacturonan metabolic process 12
GO:0010398 xylogalacturonan metabolic process 6
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010412 mannan metabolic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0010581 regulation of starch biosynthetic process 4
GO:0019252 starch biosynthetic process 2
GO:0019310 inositol catabolic process 56
GO:0019318 hexose metabolic process 10
GO:0019563 glycerol catabolic process 2
GO:0019567 arabinose biosynthetic process 2
GO:0030244 cellulose biosynthetic process 10
GO:0030245 cellulose catabolic process 8
GO:0031222 arabinan catabolic process 8
GO:0032881 regulation of polysaccharide metabolic process 6
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0033355 ascorbate glutathione cycle 22
GO:0033499 galactose catabolic process via UDP-galactose 2
GO:0034637 cellular carbohydrate biosynthetic process 2
GO:0035884 arabinan biosynthetic process 6
GO:0042732 D-xylose metabolic process 6
GO:0043255 regulation of carbohydrate biosynthetic process 4
GO:0044042 glucan metabolic process 2
GO:0044264 cellular polysaccharide metabolic process 2
GO:0045488 pectin metabolic process 4
GO:0045489 pectin biosynthetic process 10
GO:0045490 pectin catabolic process 10
GO:0045492 xylan biosynthetic process 18
GO:0045493 xylan catabolic process 76
GO:0046369 galactose biosynthetic process 2
GO:0046373 L-arabinose metabolic process 52
GO:0046855 inositol phosphate dephosphorylation 4
GO:0048358 mucilage pectin biosynthetic process 4
GO:0051070 galactomannan biosynthetic process 8
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0052746 inositol phosphorylation 10
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:1900030 regulation of pectin biosynthetic process 2
GO:1900088 regulation of inositol biosynthetic process 4
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:1990937 xylan acetylation 10
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2000905 negative regulation of starch metabolic process 6
GO:2001006 regulation of cellulose biosynthetic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001