Functional clusters
Information
- Type Gene Ontology
- Description carbohydrate metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr9 | 3 | CH_acertr_265 | 6 | 6 | 0.0000333291 |
Acer truncatum | chr11 | 3 | CH_acertr_271 | 7 | 9 | 0.0000366636 |
Brassica napus | A09 | 3 | CH_bna_405 | 6 | 6 | 0.0000313431 |
Brassica oleracea | C3 | 3 | CH_bol_349 | 7 | 13 | 0.00045595 |
Brassica oleracea | C8 | 3 | CH_bol_393 | 7 | 14 | 0.000892622 |
Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_398 | 7 | 8 | 0.00000617059 |
Camellia sinensis var. sinensis | Chr3 | 3 | CH_camsi_844 | 5 | 5 | 0.000931164 |
Cannabis sativa | NC_044374.1 | 3 | CH_cansat_182 | 7 | 10 | 0.000032616 |
Cannabis sativa | NC_044376.1 | 3 | CH_cansat_337 | 9 | 27 | 0.000622943 |
Capsicum annuum | PGAv.1.6.scaffold65 | 3 | CH_can_222 | 7 | 8 | 0.00000440037 |
Coffea canephora | chr3 | 3 | CH_ccan_196 | 7 | 62 | 0.000028433 |
Carpinus fangiana | Cfa01 | 3 | CH_cfa_242 | 6 | 7 | 0.000150505 |
Davidia involucrata | GWHABJS00000085 | 3 | CH_din_336 | 12 | 47 | 0.000319315 |
Davidia involucrata | GWHABJS00000085 | 3 | CH_din_381 | 12 | 49 | 0.000534068 |
Eucalyptus grandis | Chr01 | 3 | CH_egr_873 | 5 | 5 | 0.00083393 |
Helianthus annuus | HanXRQChr05 | 3 | CH_han_299 | 7 | 7 | 0.000000570923 |
Lonicera japonica | GWHAAZE00000006 | 3 | CH_lonja_106 | 25 | 79 | 0.000000000000290347 |
Magnolia biondii | Chr16 | 3 | CH_mbi_336 | 7 | 9 | 0.000008807 |
Medicago truncatula | chr1 | 3 | CH_mtr_640 | 5 | 5 | 0.000274065 |
Olea europaea | chr13 | 3 | CH_oeu_153 | 11 | 35 | 0.000048538 |
Papaver somniferum | NC_039363.1 | 3 | CH_pso_366 | 7 | 10 | 0.00000845277 |
Phaseolus vulgaris | Chr11 | 3 | CH_pvu_315 | 6 | 7 | 0.0004261 |
Quercus lobata | 4 | 3 | CH_qlo_589 | 7 | 7 | 0.00000487219 |
Rhododendron simsii | chr01 | 3 | CH_rsi_117 | 21 | 71 | 0.0000000000775526 |
Salvia bowleyana | GWHASIU00000007 | 3 | CH_sbo_352 | 13 | 67 | 0.0000994636 |
Sequoiadendron giganteum | chr7 | 3 | CH_sgi_554 | 10 | 14 | 0.0000000366799 |
Sequoiadendron giganteum | chr5 | 3 | CH_sgi_824 | 17 | 75 | 0.00000649592 |
Solanum pennellii | Spenn-ch06 | 3 | CH_spe_204 | 6 | 6 | 0.00000360085 |
Theobroma cacao | Chromosome_3 | 3 | CH_tca_291 | 7 | 10 | 0.0000926584 |
Vigna mungo | CM024072.1 | 3 | CH_vmu_216 | 8 | 15 | 0.000186399 |
Acer truncatum | chr9 | 4 | CH_acertr_265 | 6 | 6 | 0.0000333291 |
Acer truncatum | chr11 | 4 | CH_acertr_271 | 7 | 9 | 0.0000366636 |
Brassica napus | A09 | 4 | CH_bna_405 | 6 | 6 | 0.0000313431 |
Brassica oleracea | C3 | 4 | CH_bol_349 | 7 | 13 | 0.00045595 |
Brassica oleracea | C8 | 4 | CH_bol_393 | 7 | 14 | 0.000892622 |
Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_398 | 7 | 8 | 0.00000617059 |
Camellia sinensis var. sinensis | Chr3 | 4 | CH_camsi_844 | 5 | 5 | 0.000931164 |
Cannabis sativa | NC_044374.1 | 4 | CH_cansat_182 | 7 | 10 | 0.000032616 |
Cannabis sativa | NC_044376.1 | 4 | CH_cansat_337 | 9 | 27 | 0.000622943 |
Capsicum annuum | PGAv.1.6.scaffold65 | 4 | CH_can_222 | 7 | 8 | 0.00000440037 |
Coffea canephora | chr3 | 4 | CH_ccan_196 | 7 | 62 | 0.000028433 |
Carpinus fangiana | Cfa01 | 4 | CH_cfa_242 | 6 | 7 | 0.000150505 |
Davidia involucrata | GWHABJS00000085 | 4 | CH_din_336 | 12 | 47 | 0.000319315 |
Davidia involucrata | GWHABJS00000085 | 4 | CH_din_381 | 12 | 49 | 0.000534068 |
Eucalyptus grandis | Chr01 | 4 | CH_egr_873 | 5 | 5 | 0.00083393 |
Helianthus annuus | HanXRQChr05 | 4 | CH_han_299 | 7 | 7 | 0.000000570923 |
Lonicera japonica | GWHAAZE00000006 | 4 | CH_lonja_106 | 25 | 79 | 0.000000000000290347 |
Magnolia biondii | Chr16 | 4 | CH_mbi_336 | 7 | 9 | 0.000008807 |
Medicago truncatula | chr1 | 4 | CH_mtr_640 | 5 | 5 | 0.000274065 |
Olea europaea | chr13 | 4 | CH_oeu_153 | 11 | 35 | 0.000048538 |
Papaver somniferum | NC_039363.1 | 4 | CH_pso_366 | 7 | 10 | 0.00000845277 |
Phaseolus vulgaris | Chr11 | 4 | CH_pvu_315 | 6 | 7 | 0.0004261 |
Quercus lobata | 4 | 4 | CH_qlo_589 | 7 | 7 | 0.00000487219 |
Rhododendron simsii | chr01 | 4 | CH_rsi_117 | 21 | 71 | 0.0000000000775526 |
Salvia bowleyana | GWHASIU00000007 | 4 | CH_sbo_352 | 13 | 67 | 0.0000994636 |
Sequoiadendron giganteum | chr7 | 4 | CH_sgi_554 | 10 | 14 | 0.0000000366799 |
Sequoiadendron giganteum | chr5 | 4 | CH_sgi_824 | 17 | 75 | 0.00000649592 |
Solanum pennellii | Spenn-ch06 | 4 | CH_spe_204 | 6 | 6 | 0.00000360085 |
Theobroma cacao | Chromosome_3 | 4 | CH_tca_291 | 7 | 10 | 0.0000926584 |
Vigna mungo | CM024072.1 | 4 | CH_vmu_216 | 8 | 15 | 0.000186399 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000024 | maltose biosynthetic process | 12 |
GO:0000025 | maltose catabolic process | 2 |
GO:0000271 | polysaccharide biosynthetic process | 2 |
GO:0000272 | polysaccharide catabolic process | 10 |
GO:0005976 | polysaccharide metabolic process | 8 |
GO:0005983 | starch catabolic process | 4 |
GO:0005985 | sucrose metabolic process | 4 |
GO:0005986 | sucrose biosynthetic process | 4 |
GO:0005987 | sucrose catabolic process | 4 |
GO:0005992 | trehalose biosynthetic process | 14 |
GO:0005993 | trehalose catabolic process | 4 |
GO:0005996 | monosaccharide metabolic process | 4 |
GO:0005997 | xylulose metabolic process | 12 |
GO:0006000 | fructose metabolic process | 16 |
GO:0006004 | fucose metabolic process | 4 |
GO:0006006 | glucose metabolic process | 12 |
GO:0006007 | glucose catabolic process | 16 |
GO:0006013 | mannose metabolic process | 70 |
GO:0006020 | inositol metabolic process | 2 |
GO:0006060 | sorbitol metabolic process | 26 |
GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | 38 |
GO:0006094 | gluconeogenesis | 4 |
GO:0006096 | glycolytic process | 20 |
GO:0006109 | regulation of carbohydrate metabolic process | 4 |
GO:0006110 | regulation of glycolytic process | 2 |
GO:0009250 | glucan biosynthetic process | 4 |
GO:0009251 | glucan catabolic process | 8 |
GO:0009969 | xyloglucan biosynthetic process | 4 |
GO:0010306 | rhamnogalacturonan II biosynthetic process | 6 |
GO:0010383 | cell wall polysaccharide metabolic process | 26 |
GO:0010394 | homogalacturonan metabolic process | 12 |
GO:0010398 | xylogalacturonan metabolic process | 6 |
GO:0010400 | rhamnogalacturonan I side chain metabolic process | 2 |
GO:0010401 | pectic galactan metabolic process | 4 |
GO:0010410 | hemicellulose metabolic process | 2 |
GO:0010411 | xyloglucan metabolic process | 10 |
GO:0010412 | mannan metabolic process | 2 |
GO:0010417 | glucuronoxylan biosynthetic process | 2 |
GO:0010493 | Lewis a epitope biosynthetic process | 4 |
GO:0010581 | regulation of starch biosynthetic process | 4 |
GO:0019252 | starch biosynthetic process | 2 |
GO:0019310 | inositol catabolic process | 56 |
GO:0019318 | hexose metabolic process | 10 |
GO:0019563 | glycerol catabolic process | 2 |
GO:0019567 | arabinose biosynthetic process | 2 |
GO:0030244 | cellulose biosynthetic process | 10 |
GO:0030245 | cellulose catabolic process | 8 |
GO:0031222 | arabinan catabolic process | 8 |
GO:0032881 | regulation of polysaccharide metabolic process | 6 |
GO:0032953 | regulation of (1->3)-beta-D-glucan biosynthetic process | 2 |
GO:0033355 | ascorbate glutathione cycle | 22 |
GO:0033499 | galactose catabolic process via UDP-galactose | 2 |
GO:0034637 | cellular carbohydrate biosynthetic process | 2 |
GO:0035884 | arabinan biosynthetic process | 6 |
GO:0042732 | D-xylose metabolic process | 6 |
GO:0043255 | regulation of carbohydrate biosynthetic process | 4 |
GO:0044042 | glucan metabolic process | 2 |
GO:0044264 | cellular polysaccharide metabolic process | 2 |
GO:0045488 | pectin metabolic process | 4 |
GO:0045489 | pectin biosynthetic process | 10 |
GO:0045490 | pectin catabolic process | 10 |
GO:0045492 | xylan biosynthetic process | 18 |
GO:0045493 | xylan catabolic process | 76 |
GO:0046369 | galactose biosynthetic process | 2 |
GO:0046373 | L-arabinose metabolic process | 52 |
GO:0046855 | inositol phosphate dephosphorylation | 4 |
GO:0048358 | mucilage pectin biosynthetic process | 4 |
GO:0051070 | galactomannan biosynthetic process | 8 |
GO:0052324 | plant-type cell wall cellulose biosynthetic process | 12 |
GO:0052746 | inositol phosphorylation | 10 |
GO:0070592 | cell wall polysaccharide biosynthetic process | 4 |
GO:1900030 | regulation of pectin biosynthetic process | 2 |
GO:1900088 | regulation of inositol biosynthetic process | 4 |
GO:1902066 | regulation of cell wall pectin metabolic process | 4 |
GO:1990937 | xylan acetylation | 10 |
GO:2000082 | regulation of L-ascorbic acid biosynthetic process | 2 |
GO:2000083 | negative regulation of L-ascorbic acid biosynthetic process | 12 |
GO:2000905 | negative regulation of starch metabolic process | 6 |
GO:2001006 | regulation of cellulose biosynthetic process | 4 |
GO:2001007 | negative regulation of cellulose biosynthetic process | 34 |
GO:2001011 | positive regulation of plant-type cell wall cellulose biosynthetic process | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |