Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of cellular macromolecule biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 3 CH_acertr_92 9 28 0.0000000101608
Amborella trichopoda AmTr_v1.0_scaffold00030 3 CH_atr_238 5 11 0.000233918
Beta vulgaris Chr7_EL10_PGA_scaffold5 3 CH_bvu_219 5 11 0.00026099
Camellia sinensis var. sinensis Chr11 3 CH_camsi_448 7 26 0.0000158572
Cicer arietinum L. Ca_LG3_v3 3 CH_car_84 6 15 0.0000298639
Davidia involucrata GWHABJS00000007 3 CH_din_211 8 39 0.0000220158
Davidia involucrata GWHABJS00000010 3 CH_din_391 4 5 0.000676909
Pisum sativum chr3LG5 3 CH_psa_365 4 6 0.00061219
Quercus lobata 1 3 CH_qlo_565 8 38 0.00000332591
Acer truncatum chr3 4 CH_acertr_92 9 28 0.0000000101608
Amborella trichopoda AmTr_v1.0_scaffold00030 4 CH_atr_238 5 11 0.000233918
Beta vulgaris Chr7_EL10_PGA_scaffold5 4 CH_bvu_219 5 11 0.00026099
Camellia sinensis var. sinensis Chr11 4 CH_camsi_448 7 26 0.0000158572
Cicer arietinum L. Ca_LG3_v3 4 CH_car_84 6 15 0.0000298639
Davidia involucrata GWHABJS00000007 4 CH_din_211 8 39 0.0000220158
Davidia involucrata GWHABJS00000010 4 CH_din_391 4 5 0.000676909
Pisum sativum chr3LG5 4 CH_psa_365 4 6 0.00061219
Quercus lobata 1 4 CH_qlo_565 8 38 0.00000332591

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032055 negative regulation of translation in response to stress 2
GO:0032876 negative regulation of DNA endoreduplication 2
GO:0035278 miRNA mediated inhibition of translation 56
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0080149 sucrose induced translational repression 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:2000104 negative regulation of DNA-dependent DNA replication 6
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2001007 negative regulation of cellulose biosynthetic process 34

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001