Functional clusters

Information

  • Type Gene Ontology
  • Description protein catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr11 3 CH_camsi_529 5 7 0.0000509307
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_396 7 28 0.000155897
Solanum pennellii Spenn-ch10 3 CH_spe_412 4 5 0.000428564
Camellia sinensis var. sinensis Chr11 4 CH_camsi_529 5 7 0.0000509307
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_396 7 28 0.000155897
Solanum pennellii Spenn-ch10 4 CH_spe_412 4 5 0.000428564

Available child term results

Ontology identifier Description Number of clusters
GO:0002084 protein depalmitoylation 6
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006516 glycoprotein catabolic process 2
GO:0010304 PSII associated light-harvesting complex II catabolic process 2
GO:0010498 proteasomal protein catabolic process 2
GO:0016598 protein arginylation 2
GO:0030327 prenylated protein catabolic process 12
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0042177 negative regulation of protein catabolic process 14
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0044257 cellular protein catabolic process 2
GO:0045732 positive regulation of protein catabolic process 2
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001