Functional clusters
Information
- Type Gene Ontology
- Description spliceosomal complex assembly
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 3 | CH_arhy_662 | 2 | 2 | 0.000628705 |
Amborella trichopoda | AmTr_v1.0_scaffold00029 | 3 | CH_atr_325 | 2 | 2 | 0.000794407 |
Brassica carinata | ChrB04 | 3 | CH_bca_162 | 3 | 3 | 0.0000000137087 |
Camellia sinensis var. sinensis | Chr13 | 3 | CH_camsi_213 | 4 | 17 | 0.0000000240718 |
Capsicum annuum | PGAv.1.6.scaffold128 | 3 | CH_can_375 | 2 | 2 | 0.000247831 |
Carya illinoinensis | Chr16 | 3 | CH_cil_499 | 2 | 2 | 0.000619828 |
Davidia involucrata | GWHABJS00000002 | 3 | CH_din_400 | 2 | 2 | 0.000750188 |
Helianthus annuus | HanXRQChr03 | 3 | CH_han_153 | 4 | 6 | 0.000000000327139 |
Lotus japonicus | chr1 | 3 | CH_lja_354 | 2 | 2 | 0.000715077 |
Phaseolus vulgaris | Chr01 | 3 | CH_pvu_365 | 2 | 2 | 0.000734727 |
Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_727 | 2 | 2 | 0.000597979 |
Vanilla planifolia | CM028154.1 | 3 | CH_vpl_146 | 4 | 51 | 0.0000105235 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 4 | CH_arhy_662 | 2 | 2 | 0.000628705 |
Amborella trichopoda | AmTr_v1.0_scaffold00029 | 4 | CH_atr_325 | 2 | 2 | 0.000794407 |
Brassica carinata | ChrB04 | 4 | CH_bca_162 | 3 | 3 | 0.0000000137087 |
Camellia sinensis var. sinensis | Chr13 | 4 | CH_camsi_213 | 4 | 17 | 0.0000000240718 |
Capsicum annuum | PGAv.1.6.scaffold128 | 4 | CH_can_375 | 2 | 2 | 0.000247831 |
Carya illinoinensis | Chr16 | 4 | CH_cil_499 | 2 | 2 | 0.000619828 |
Davidia involucrata | GWHABJS00000002 | 4 | CH_din_400 | 2 | 2 | 0.000750188 |
Helianthus annuus | HanXRQChr03 | 4 | CH_han_153 | 4 | 6 | 0.000000000327139 |
Lotus japonicus | chr1 | 4 | CH_lja_354 | 2 | 2 | 0.000715077 |
Phaseolus vulgaris | Chr01 | 4 | CH_pvu_365 | 2 | 2 | 0.000734727 |
Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_727 | 2 | 2 | 0.000597979 |
Vanilla planifolia | CM028154.1 | 4 | CH_vpl_146 | 4 | 51 | 0.0000105235 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000354 | cis assembly of pre-catalytic spliceosome | 2 |
GO:0000395 | mRNA 5'-splice site recognition | 2 |
GO:0006376 | mRNA splice site selection | 8 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |