Functional clusters

Information

  • Type Gene Ontology
  • Description alpha-amino acid catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb6-4 3 CH_fan_359 3 4 0.0000702704
Fragaria vesca Fvb6 3 CH_fve_272 3 5 0.000119609
Quercus lobata 4 3 CH_qlo_618 4 13 0.0000080495
Vitis vinifera chr3 3 CH_vvi_294 3 6 0.000117875
Fragaria x ananassa Fvb6-4 4 CH_fan_359 3 4 0.0000702704
Fragaria vesca Fvb6 4 CH_fve_272 3 5 0.000119609
Quercus lobata 4 4 CH_qlo_618 4 13 0.0000080495
Vitis vinifera chr3 4 CH_vvi_294 3 6 0.000117875

Available child term results

Ontology identifier Description Number of clusters
GO:0006559 L-phenylalanine catabolic process 6
GO:0006562 proline catabolic process 4
GO:0006569 tryptophan catabolic process 18
GO:0006572 tyrosine catabolic process 6
GO:0010133 proline catabolic process to glutamate 4
GO:0019447 D-cysteine catabolic process 12
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019464 glycine decarboxylation via glycine cleavage system 4
GO:0019481 L-alanine catabolic process, by transamination 8
GO:0019544 arginine catabolic process to glutamate 2
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001