Functional clusters
Information
- Type Gene Ontology
- Description alpha-amino acid catabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Fragaria x ananassa | Fvb6-4 | 3 | CH_fan_359 | 3 | 4 | 0.0000702704 |
Fragaria vesca | Fvb6 | 3 | CH_fve_272 | 3 | 5 | 0.000119609 |
Quercus lobata | 4 | 3 | CH_qlo_618 | 4 | 13 | 0.0000080495 |
Vitis vinifera | chr3 | 3 | CH_vvi_294 | 3 | 6 | 0.000117875 |
Fragaria x ananassa | Fvb6-4 | 4 | CH_fan_359 | 3 | 4 | 0.0000702704 |
Fragaria vesca | Fvb6 | 4 | CH_fve_272 | 3 | 5 | 0.000119609 |
Quercus lobata | 4 | 4 | CH_qlo_618 | 4 | 13 | 0.0000080495 |
Vitis vinifera | chr3 | 4 | CH_vvi_294 | 3 | 6 | 0.000117875 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0006559 | L-phenylalanine catabolic process | 6 |
GO:0006562 | proline catabolic process | 4 |
GO:0006569 | tryptophan catabolic process | 18 |
GO:0006572 | tyrosine catabolic process | 6 |
GO:0010133 | proline catabolic process to glutamate | 4 |
GO:0019447 | D-cysteine catabolic process | 12 |
GO:0019450 | L-cysteine catabolic process to pyruvate | 8 |
GO:0019458 | methionine catabolic process via 2-oxobutanoate | 10 |
GO:0019464 | glycine decarboxylation via glycine cleavage system | 4 |
GO:0019481 | L-alanine catabolic process, by transamination | 8 |
GO:0019544 | arginine catabolic process to glutamate | 2 |
GO:0033512 | L-lysine catabolic process to acetyl-CoA via saccharopine | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |