Functional clusters
Information
- Type Gene Ontology
- Description organic hydroxy compound catabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group6 | 3 | CH_ach_95 | 4 | 10 | 0.0000101765 |
| Aquilegia oxysepala | CHR01 | 3 | CH_aox_144 | 5 | 26 | 0.0000215529 |
| Camellia sinensis var. sinensis | Chr8 | 3 | CH_camsi_271 | 4 | 5 | 0.000000196195 |
| Camellia sinensis var. sinensis | Chr5 | 3 | CH_camsi_734 | 3 | 5 | 0.000417115 |
| Corylus avellana | 2 | 3 | CH_cav_161 | 4 | 8 | 0.00000385887 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1516 | 3 | CH_cqu_555 | 3 | 5 | 0.000983446 |
| Daucus carota | DCARv2_Chr8 | 3 | CH_dca_321 | 3 | 4 | 0.000205712 |
| Nicotiana tabacum | Nitab4.5_0001198 | 3 | CH_nta_149 | 3 | 6 | 0.0007291 |
| Nicotiana tabacum | Nitab4.5_0000143 | 3 | CH_nta_78 | 4 | 16 | 0.0000758079 |
| Punica granatum | NC_045131.1 | 3 | CH_pgr_362 | 3 | 5 | 0.000601868 |
| Quercus lobata | 5 | 3 | CH_qlo_914 | 3 | 4 | 0.00033275 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_718 | 3 | 6 | 0.000587305 |
| Rhododendron simsii | chr13 | 3 | CH_rsi_266 | 5 | 20 | 0.0000027178 |
| Theobroma cacao | Chromosome_6 | 3 | CH_tca_401 | 4 | 22 | 0.000772622 |
| Actinidia chinensis | Lachesis_group6 | 4 | CH_ach_95 | 4 | 10 | 0.0000101765 |
| Aquilegia oxysepala | CHR01 | 4 | CH_aox_144 | 5 | 26 | 0.0000215529 |
| Camellia sinensis var. sinensis | Chr8 | 4 | CH_camsi_271 | 4 | 5 | 0.000000196195 |
| Camellia sinensis var. sinensis | Chr5 | 4 | CH_camsi_734 | 3 | 5 | 0.000417115 |
| Corylus avellana | 2 | 4 | CH_cav_161 | 4 | 8 | 0.00000385887 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1516 | 4 | CH_cqu_555 | 3 | 5 | 0.000983446 |
| Daucus carota | DCARv2_Chr8 | 4 | CH_dca_321 | 3 | 4 | 0.000205712 |
| Nicotiana tabacum | Nitab4.5_0001198 | 4 | CH_nta_149 | 3 | 6 | 0.0007291 |
| Nicotiana tabacum | Nitab4.5_0000143 | 4 | CH_nta_78 | 4 | 16 | 0.0000758079 |
| Punica granatum | NC_045131.1 | 4 | CH_pgr_362 | 3 | 5 | 0.000601868 |
| Quercus lobata | 5 | 4 | CH_qlo_914 | 3 | 4 | 0.00033275 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_718 | 3 | 6 | 0.000587305 |
| Rhododendron simsii | chr13 | 4 | CH_rsi_266 | 5 | 20 | 0.0000027178 |
| Theobroma cacao | Chromosome_6 | 4 | CH_tca_401 | 4 | 22 | 0.000772622 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0016127 | sterol catabolic process | 10 |
| GO:0019310 | inositol catabolic process | 56 |
| GO:0019563 | glycerol catabolic process | 2 |
| GO:0046244 | salicylic acid catabolic process | 42 |
| GO:0046345 | abscisic acid catabolic process | 16 |
| GO:0046855 | inositol phosphate dephosphorylation | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |