Functional clusters

Information

  • Type Gene Ontology
  • Description lipid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Chenopodium quinoa C_Quinoa_Scaffold_1352 3 CH_cqu_456 12 72 0.000367574
Chenopodium quinoa C_Quinoa_Scaffold_3163 3 CH_cqu_472 10 46 0.000439116
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_353 6 14 0.000266698
Erigeron canadensis Conyza_canadensis_scaffold:3 3 CH_eca_454 4 4 0.000749225
Manihot esculenta Chromosome03 3 CH_mes_239 6 7 0.00000840464
Medicago truncatula chr4 3 CH_mtr_652 7 24 0.000343346
Chenopodium quinoa C_Quinoa_Scaffold_1352 4 CH_cqu_456 12 72 0.000367574
Chenopodium quinoa C_Quinoa_Scaffold_3163 4 CH_cqu_472 10 46 0.000439116
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_353 6 14 0.000266698
Erigeron canadensis Conyza_canadensis_scaffold:3 4 CH_eca_454 4 4 0.000749225
Manihot esculenta Chromosome03 4 CH_mes_239 6 7 0.00000840464
Medicago truncatula chr4 4 CH_mtr_652 7 24 0.000343346

Available child term results

Ontology identifier Description Number of clusters
GO:0006506 GPI anchor biosynthetic process 14
GO:0006633 fatty acid biosynthetic process 46
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0006651 diacylglycerol biosynthetic process 26
GO:0006654 phosphatidic acid biosynthetic process 4
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 2
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006694 steroid biosynthetic process 14
GO:0008299 isoprenoid biosynthetic process 26
GO:0008654 phospholipid biosynthetic process 4
GO:0009686 gibberellin biosynthetic process 2
GO:0009695 jasmonic acid biosynthetic process 4
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010422 regulation of brassinosteroid biosynthetic process 44
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0016024 CDP-diacylglycerol biosynthetic process 2
GO:0016094 polyprenol biosynthetic process 4
GO:0016099 monoterpenoid biosynthetic process 12
GO:0016102 diterpenoid biosynthetic process 82
GO:0016104 triterpenoid biosynthetic process 6
GO:0016106 sesquiterpenoid biosynthetic process 6
GO:0016114 terpenoid biosynthetic process 6
GO:0016123 xanthophyll biosynthetic process 2
GO:0016126 sterol biosynthetic process 4
GO:0016255 attachment of GPI anchor to protein 14
GO:0019408 dolichol biosynthetic process 18
GO:0019432 triglyceride biosynthetic process 2
GO:0019745 pentacyclic triterpenoid biosynthetic process 6
GO:0030497 fatty acid elongation 6
GO:0032049 cardiolipin biosynthetic process 8
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 4
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0043693 monoterpene biosynthetic process 4
GO:0045017 glycerolipid biosynthetic process 2
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0046512 sphingosine biosynthetic process 16
GO:0046520 sphingoid biosynthetic process 18
GO:0046854 phosphatidylinositol phosphate biosynthetic process 2
GO:0051502 diterpene phytoalexin biosynthetic process 16
GO:0051762 sesquiterpene biosynthetic process 14
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:0106118 regulation of sterol biosynthetic process 4
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901601 strigolactone biosynthetic process 10
GO:1901937 beta-caryophyllene biosynthetic process 4
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001