Functional clusters
Information
- Type Gene Ontology
- Description protein polyubiquitination
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 3 | CH_aar_16 | 7 | 10 | 1.86961e-17 |
| Actinidia chinensis | Lachesis_group17 | 3 | CH_ach_156 | 3 | 10 | 0.000151666 |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_1 | 26 | 53 | 2.49764e-49 |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_127 | 4 | 4 | 0.00000183209 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_28 | 11 | 19 | 9.77424e-27 |
| Brassica carinata | ChrC08 | 3 | CH_bca_101 | 5 | 5 | 0.000000000182969 |
| Brassica carinata | ChrB02 | 3 | CH_bca_135 | 6 | 17 | 0.00000000249089 |
| Brassica carinata | ChrC09 | 3 | CH_bca_428 | 4 | 8 | 0.0000113707 |
| Brassica carinata | ChrC07 | 3 | CH_bca_647 | 3 | 3 | 0.000143896 |
| Brassica carinata | ChrC07 | 3 | CH_bca_742 | 4 | 16 | 0.000293497 |
| Brassica napus | C06 | 3 | CH_bna_108 | 6 | 16 | 0.000000000469718 |
| Brassica napus | A06 | 3 | CH_bna_412 | 4 | 12 | 0.0000370255 |
| Brassica napus | C08 | 3 | CH_bna_452 | 3 | 3 | 0.0000835678 |
| Brassica napus | A07 | 3 | CH_bna_512 | 4 | 18 | 0.000227895 |
| Brassica napus | C08 | 3 | CH_bna_513 | 4 | 18 | 0.000227895 |
| Brassica oleracea | C8 | 3 | CH_bol_252 | 4 | 13 | 0.0000472541 |
| Brassica oleracea | C6 | 3 | CH_bol_42 | 7 | 19 | 0.00000000000297697 |
| Brassica rapa | A09 | 3 | CH_bra_181 | 4 | 15 | 0.0000869144 |
| Brassica rapa | A07 | 3 | CH_bra_50 | 6 | 17 | 0.000000000819081 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_2 | 18 | 37 | 1.08102e-34 |
| Cardamine hirsuta | Chr4 | 3 | CH_chi_387 | 4 | 14 | 0.000702402 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_1 | 20 | 42 | 1.41023e-35 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_158 | 4 | 4 | 0.00000261036 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_56 | 7 | 12 | 0.0000000000549903 |
| Cucumis sativus L. | chr6 | 3 | CH_csa_141 | 5 | 66 | 0.00000637761 |
| Davidia involucrata | GWHABJS00000021 | 3 | CH_din_140 | 3 | 3 | 0.000000619075 |
| Eutrema salsugineum | scaffold_19 | 3 | CH_esa_1 | 17 | 35 | 6.08043e-33 |
| Eutrema salsugineum | scaffold_11 | 3 | CH_esa_212 | 3 | 3 | 0.000268402 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_331 | 3 | 5 | 0.00000887314 |
| Medicago truncatula | chr2 | 3 | CH_mtr_410 | 3 | 5 | 0.00000723951 |
| Quercus lobata | CM012294 | 3 | CH_qlo_454 | 4 | 8 | 0.000000211084 |
| Simmondsia chinensis | GWHAASQ00000013 | 3 | CH_sci_49 | 5 | 31 | 0.0000000526526 |
| Sapria himalayana | scaffold50_4036370 | 3 | CH_shi_45 | 4 | 7 | 0.0000000140271 |
| Sapria himalayana | scaffold1_25991295 | 3 | CH_shi_5 | 6 | 6 | 2.36081e-17 |
| Tripterygium wilfordii | NC_052252.1 | 3 | CH_twi_140 | 3 | 4 | 0.00000308066 |
| Utricularia gibba | unitig_88 | 3 | CH_ugi_50 | 3 | 6 | 0.0000113034 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_234 | 4 | 39 | 0.000134171 |
| Aethionema arabicum | LG-4 | 4 | CH_aar_16 | 7 | 10 | 1.86961e-17 |
| Actinidia chinensis | Lachesis_group17 | 4 | CH_ach_156 | 3 | 10 | 0.000151666 |
| Arabidopsis lyrata | scaffold_5 | 4 | CH_aly_1 | 26 | 53 | 2.49764e-49 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_127 | 4 | 4 | 0.00000183209 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_28 | 11 | 19 | 9.77424e-27 |
| Brassica carinata | ChrC08 | 4 | CH_bca_101 | 5 | 5 | 0.000000000182969 |
| Brassica carinata | ChrB02 | 4 | CH_bca_135 | 6 | 17 | 0.00000000249089 |
| Brassica carinata | ChrC09 | 4 | CH_bca_428 | 4 | 8 | 0.0000113707 |
| Brassica carinata | ChrC07 | 4 | CH_bca_647 | 3 | 3 | 0.000143896 |
| Brassica carinata | ChrC07 | 4 | CH_bca_742 | 4 | 16 | 0.000293497 |
| Brassica napus | C06 | 4 | CH_bna_108 | 6 | 16 | 0.000000000469718 |
| Brassica napus | A06 | 4 | CH_bna_412 | 4 | 12 | 0.0000370255 |
| Brassica napus | C08 | 4 | CH_bna_452 | 3 | 3 | 0.0000835678 |
| Brassica napus | A07 | 4 | CH_bna_512 | 4 | 18 | 0.000227895 |
| Brassica napus | C08 | 4 | CH_bna_513 | 4 | 18 | 0.000227895 |
| Brassica oleracea | C8 | 4 | CH_bol_252 | 4 | 13 | 0.0000472541 |
| Brassica oleracea | C6 | 4 | CH_bol_42 | 7 | 19 | 0.00000000000297697 |
| Brassica rapa | A09 | 4 | CH_bra_181 | 4 | 15 | 0.0000869144 |
| Brassica rapa | A07 | 4 | CH_bra_50 | 6 | 17 | 0.000000000819081 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_2 | 18 | 37 | 1.08102e-34 |
| Cardamine hirsuta | Chr4 | 4 | CH_chi_387 | 4 | 14 | 0.000702402 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_1 | 20 | 42 | 1.41023e-35 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_158 | 4 | 4 | 0.00000261036 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_56 | 7 | 12 | 0.0000000000549903 |
| Cucumis sativus L. | chr6 | 4 | CH_csa_141 | 5 | 66 | 0.00000637761 |
| Davidia involucrata | GWHABJS00000021 | 4 | CH_din_140 | 3 | 3 | 0.000000619075 |
| Eutrema salsugineum | scaffold_19 | 4 | CH_esa_1 | 17 | 35 | 6.08043e-33 |
| Eutrema salsugineum | scaffold_11 | 4 | CH_esa_212 | 3 | 3 | 0.000268402 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_331 | 3 | 5 | 0.00000887314 |
| Medicago truncatula | chr2 | 4 | CH_mtr_410 | 3 | 5 | 0.00000723951 |
| Quercus lobata | CM012294 | 4 | CH_qlo_454 | 4 | 8 | 0.000000211084 |
| Simmondsia chinensis | GWHAASQ00000013 | 4 | CH_sci_49 | 5 | 31 | 0.0000000526526 |
| Sapria himalayana | scaffold50_4036370 | 4 | CH_shi_45 | 4 | 7 | 0.0000000140271 |
| Sapria himalayana | scaffold1_25991295 | 4 | CH_shi_5 | 6 | 6 | 2.36081e-17 |
| Tripterygium wilfordii | NC_052252.1 | 4 | CH_twi_140 | 3 | 4 | 0.00000308066 |
| Utricularia gibba | unitig_88 | 4 | CH_ugi_50 | 3 | 6 | 0.0000113034 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_234 | 4 | 39 | 0.000134171 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0070534 | protein K63-linked ubiquitination | 10 |
| GO:1902916 | positive regulation of protein polyubiquitination | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |