Functional clusters

Information

  • Type Gene Ontology
  • Description DNA repair

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr2 3 CH_camsi_212 8 17 0.0000000236111
Camellia sinensis var. sinensis Chr8 3 CH_camsi_644 9 66 0.000207452
Cardamine hirsuta Chr7 3 CH_chi_155 5 5 0.00000273023
Lonicera japonica GWHAAZE00000007 3 CH_lonja_426 4 4 0.000133413
Populus trichocarpa Chr14 3 CH_ptr_340 6 17 0.00011505
Quercus lobata 1 3 CH_qlo_638 10 72 0.0000124639
Salix brachista GWHAAZH00000019 3 CH_sbr_155 6 9 0.000000874363
Sapria himalayana scaffold34_6262321 3 CH_shi_247 4 7 0.000592253
Camellia sinensis var. sinensis Chr2 4 CH_camsi_212 8 17 0.0000000236111
Camellia sinensis var. sinensis Chr8 4 CH_camsi_644 9 66 0.000207452
Cardamine hirsuta Chr7 4 CH_chi_155 5 5 0.00000273023
Lonicera japonica GWHAAZE00000007 4 CH_lonja_426 4 4 0.000133413
Populus trichocarpa Chr14 4 CH_ptr_340 6 17 0.00011505
Quercus lobata 1 4 CH_qlo_638 10 72 0.0000124639
Salix brachista GWHAAZH00000019 4 CH_sbr_155 6 9 0.000000874363
Sapria himalayana scaffold34_6262321 4 CH_shi_247 4 7 0.000592253

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 6
GO:0000706 meiotic DNA double-strand break processing 4
GO:0000719 photoreactive repair 12
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000724 double-strand break repair via homologous recombination 6
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0006282 regulation of DNA repair 2
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006289 nucleotide-excision repair 8
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006303 double-strand break repair via nonhomologous end joining 2
GO:0010213 non-photoreactive DNA repair 2
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0036297 interstrand cross-link repair 12
GO:0042276 error-prone translesion synthesis 36
GO:0045003 double-strand break repair via synthesis-dependent strand annealing 2
GO:0045739 positive regulation of DNA repair 4
GO:0051103 DNA ligation involved in DNA repair 24
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0097510 base-excision repair, AP site formation via deaminated base removal 12
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001