Functional clusters

Information

  • Type Gene Ontology
  • Description organonitrogen compound biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Chr2_EL10_PGA_scaffold6 3 CH_bvu_154 9 16 0.0000394513
Corylus avellana 1 3 CH_cav_282 8 14 0.000119225
Simmondsia chinensis GWHAASQ00000021 3 CH_sci_256 10 26 0.000677149
Beta vulgaris Chr2_EL10_PGA_scaffold6 4 CH_bvu_154 9 16 0.0000394513
Corylus avellana 1 4 CH_cav_282 8 14 0.000119225
Simmondsia chinensis GWHAASQ00000021 4 CH_sci_256 10 26 0.000677149

Available child term results

Ontology identifier Description Number of clusters
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000162 tryptophan biosynthetic process 2
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0001731 formation of translation preinitiation complex 14
GO:0002182 cytoplasmic translational elongation 20
GO:0006024 glycosaminoglycan biosynthetic process 2
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006167 AMP biosynthetic process 8
GO:0006169 adenosine salvage 10
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006223 uracil salvage 2
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006412 translation 8
GO:0006413 translational initiation 8
GO:0006414 translational elongation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 8
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006486 protein glycosylation 86
GO:0006487 protein N-linked glycosylation 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006493 protein O-linked glycosylation 2
GO:0006499 N-terminal protein myristoylation 4
GO:0006506 GPI anchor biosynthetic process 14
GO:0006529 asparagine biosynthetic process 14
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006537 glutamate biosynthetic process 10
GO:0006542 glutamine biosynthetic process 8
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006571 tyrosine biosynthetic process 4
GO:0006592 ornithine biosynthetic process 12
GO:0006596 polyamine biosynthetic process 6
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006729 tetrahydrobiopterin biosynthetic process 4
GO:0006741 NADP biosynthetic process 16
GO:0006747 FAD biosynthetic process 2
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 2
GO:0006780 uroporphyrinogen III biosynthetic process 4
GO:0006784 heme A biosynthetic process 22
GO:0009070 serine family amino acid biosynthetic process 4
GO:0009073 aromatic amino acid family biosynthetic process 2
GO:0009082 branched-chain amino acid biosynthetic process 8
GO:0009089 lysine biosynthetic process via diaminopimelate 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 20
GO:0009099 valine biosynthetic process 2
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009228 thiamine biosynthetic process 4
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009231 riboflavin biosynthetic process 2
GO:0009309 amine biosynthetic process 2
GO:0009684 indoleacetic acid biosynthetic process 2
GO:0009759 indole glucosinolate biosynthetic process 20
GO:0010024 phytochromobilin biosynthetic process 6
GO:0015986 ATP synthesis coupled proton transport 22
GO:0015995 chlorophyll biosynthetic process 4
GO:0016255 attachment of GPI anchor to protein 14
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0018279 protein N-linked glycosylation via asparagine 2
GO:0018345 protein palmitoylation 2
GO:0019264 glycine biosynthetic process from serine 14
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019354 siroheme biosynthetic process 2
GO:0019365 pyridine nucleotide salvage 6
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0019761 glucosinolate biosynthetic process 2
GO:0030187 melatonin biosynthetic process 4
GO:0030418 nicotianamine biosynthetic process 38
GO:0032055 negative regulation of translation in response to stress 2
GO:0032264 IMP salvage 18
GO:0032324 molybdopterin cofactor biosynthetic process 4
GO:0032543 mitochondrial translation 8
GO:0033014 tetrapyrrole biosynthetic process 2
GO:0033387 putrescine biosynthetic process from ornithine 34
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 18
GO:0033466 trans-zeatin biosynthetic process 2
GO:0033506 glucosinolate biosynthetic process from homomethionine 4
GO:0034355 NAD salvage 2
GO:0035278 miRNA mediated inhibition of translation 56
GO:0036066 protein O-linked fucosylation 14
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 16
GO:0042819 vitamin B6 biosynthetic process 12
GO:0043043 peptide biosynthetic process 2
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0045727 positive regulation of translation 18
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0046109 uridine biosynthetic process 2
GO:0046512 sphingosine biosynthetic process 16
GO:0046520 sphingoid biosynthetic process 18
GO:0046656 folic acid biosynthetic process 2
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process 6
GO:0046938 phytochelatin biosynthetic process 52
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0070179 D-serine biosynthetic process 40
GO:0070455 positive regulation of heme biosynthetic process 4
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2
GO:0072344 rescue of stalled ribosome 12
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080028 nitrile biosynthetic process 2
GO:0080149 sucrose induced translational repression 2
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0097167 circadian regulation of translation 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1901162 primary amino compound biosynthetic process 2
GO:1901607 alpha-amino acid biosynthetic process 2
GO:1901695 tyramine biosynthetic process 20
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001