Functional clusters

Information

  • Type Gene Ontology
  • Description organic acid metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria vesca Fvb7 3 CH_fve_201 6 6 0.0000113607
Fragaria vesca Fvb7 4 CH_fve_201 6 6 0.0000113607

Available child term results

Ontology identifier Description Number of clusters
GO:0000162 tryptophan biosynthetic process 2
GO:0001561 fatty acid alpha-oxidation 42
GO:0001676 long-chain fatty acid metabolic process 2
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006083 acetate metabolic process 4
GO:0006090 pyruvate metabolic process 6
GO:0006096 glycolytic process 20
GO:0006101 citrate metabolic process 2
GO:0006102 isocitrate metabolic process 2
GO:0006105 succinate metabolic process 14
GO:0006106 fumarate metabolic process 26
GO:0006107 oxaloacetate metabolic process 6
GO:0006108 malate metabolic process 2
GO:0006110 regulation of glycolytic process 2
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006520 cellular amino acid metabolic process 2
GO:0006525 arginine metabolic process 2
GO:0006529 asparagine biosynthetic process 14
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006537 glutamate biosynthetic process 10
GO:0006541 glutamine metabolic process 2
GO:0006542 glutamine biosynthetic process 8
GO:0006544 glycine metabolic process 2
GO:0006551 leucine metabolic process 6
GO:0006559 L-phenylalanine catabolic process 6
GO:0006560 proline metabolic process 2
GO:0006562 proline catabolic process 4
GO:0006569 tryptophan catabolic process 18
GO:0006571 tyrosine biosynthetic process 4
GO:0006572 tyrosine catabolic process 6
GO:0006574 valine catabolic process 4
GO:0006591 ornithine metabolic process 14
GO:0006592 ornithine biosynthetic process 12
GO:0006631 fatty acid metabolic process 8
GO:0006633 fatty acid biosynthetic process 46
GO:0006635 fatty acid beta-oxidation 6
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0006780 uroporphyrinogen III biosynthetic process 4
GO:0006799 polyphosphate biosynthetic process 2
GO:0009064 glutamine family amino acid metabolic process 2
GO:0009069 serine family amino acid metabolic process 2
GO:0009070 serine family amino acid biosynthetic process 4
GO:0009073 aromatic amino acid family biosynthetic process 2
GO:0009082 branched-chain amino acid biosynthetic process 8
GO:0009089 lysine biosynthetic process via diaminopimelate 2
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 20
GO:0009099 valine biosynthetic process 2
GO:0009423 chorismate biosynthetic process 2
GO:0009440 cyanate catabolic process 4
GO:0009448 gamma-aminobutyric acid metabolic process 2
GO:0009684 indoleacetic acid biosynthetic process 2
GO:0009686 gibberellin biosynthetic process 2
GO:0009695 jasmonic acid biosynthetic process 4
GO:0009697 salicylic acid biosynthetic process 28
GO:0009759 indole glucosinolate biosynthetic process 20
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010133 proline catabolic process to glutamate 4
GO:0010337 regulation of salicylic acid metabolic process 16
GO:0010364 regulation of ethylene biosynthetic process 4
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010366 negative regulation of ethylene biosynthetic process 4
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010430 fatty acid omega-oxidation 4
GO:0010597 green leaf volatile biosynthetic process 8
GO:0016053 organic acid biosynthetic process 4
GO:0018901 2,4-dichlorophenoxyacetic acid metabolic process 16
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 6
GO:0019264 glycine biosynthetic process from serine 14
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019346 transsulfuration 8
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019447 D-cysteine catabolic process 12
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019464 glycine decarboxylation via glycine cleavage system 4
GO:0019481 L-alanine catabolic process, by transamination 8
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0019544 arginine catabolic process to glutamate 2
GO:0019605 butyrate metabolic process 2
GO:0019632 shikimate metabolic process 6
GO:0019760 glucosinolate metabolic process 4
GO:0019761 glucosinolate biosynthetic process 2
GO:0019762 glucosinolate catabolic process 12
GO:0030418 nicotianamine biosynthetic process 38
GO:0030497 fatty acid elongation 6
GO:0031407 oxylipin metabolic process 8
GO:0031408 oxylipin biosynthetic process 24
GO:0031998 regulation of fatty acid beta-oxidation 2
GO:0033355 ascorbate glutathione cycle 22
GO:0033387 putrescine biosynthetic process from ornithine 34
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 18
GO:0033473 indoleacetic acid conjugate metabolic process 2
GO:0033481 galacturonate biosynthetic process 2
GO:0033506 glucosinolate biosynthetic process from homomethionine 4
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 8
GO:0042128 nitrate assimilation 8
GO:0042183 formate catabolic process 2
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 16
GO:0042343 indole glucosinolate metabolic process 8
GO:0042344 indole glucosinolate catabolic process 2
GO:0042758 long-chain fatty acid catabolic process 2
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042760 very long-chain fatty acid catabolic process 2
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0043039 tRNA aminoacylation 6
GO:0043436 oxoacid metabolic process 8
GO:0045122 aflatoxin biosynthetic process 10
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0046244 salicylic acid catabolic process 42
GO:0046345 abscisic acid catabolic process 16
GO:0046394 carboxylic acid biosynthetic process 6
GO:0046395 carboxylic acid catabolic process 6
GO:0046459 short-chain fatty acid metabolic process 2
GO:0046656 folic acid biosynthetic process 2
GO:0051791 medium-chain fatty acid metabolic process 6
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0070179 D-serine biosynthetic process 40
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2
GO:0080024 indolebutyric acid metabolic process 2
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0080142 regulation of salicylic acid biosynthetic process 10
GO:0090357 regulation of tryptophan metabolic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:0090410 malonate catabolic process 2
GO:0090431 alkyl caffeate ester biosynthetic process 6
GO:1901606 alpha-amino acid catabolic process 8
GO:1901607 alpha-amino acid biosynthetic process 2
GO:1901747 prephenate(2-) biosynthetic process 2
GO:1901847 nicotinate metabolic process 6
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2000214 regulation of proline metabolic process 12
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001