Functional clusters
Information
- Type Gene Ontology
- Description mRNA splicing, via spliceosome
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aquilegia oxysepala | CHR03 | 3 | CH_aox_203 | 4 | 5 | 0.000121548 |
Amborella trichopoda | AmTr_v1.0_scaffold00060 | 3 | CH_atr_169 | 4 | 5 | 0.0000218962 |
Eucalyptus grandis | Chr07 | 3 | CH_egr_698 | 4 | 7 | 0.0000610793 |
Nelumbo nucifera | chr2 | 3 | CH_nnu_323 | 3 | 3 | 0.000793247 |
Quercus lobata | 4 | 3 | CH_qlo_1037 | 4 | 9 | 0.000931064 |
Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_782 | 3 | 3 | 0.000977497 |
Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_344 | 4 | 10 | 0.0000796543 |
Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_1316 | 3 | 3 | 0.000575625 |
Solanum lycopersicum | SL4.0ch05 | 3 | CH_sly_481 | 4 | 6 | 0.000332999 |
Selenicereus undatus | Scaffold_33680 | 3 | CH_sun_130 | 4 | 9 | 0.000194173 |
Aquilegia oxysepala | CHR03 | 4 | CH_aox_203 | 4 | 5 | 0.000121548 |
Amborella trichopoda | AmTr_v1.0_scaffold00060 | 4 | CH_atr_169 | 4 | 5 | 0.0000218962 |
Eucalyptus grandis | Chr07 | 4 | CH_egr_698 | 4 | 7 | 0.0000610793 |
Nelumbo nucifera | chr2 | 4 | CH_nnu_323 | 3 | 3 | 0.000793247 |
Quercus lobata | 4 | 4 | CH_qlo_1037 | 4 | 9 | 0.000931064 |
Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_782 | 3 | 3 | 0.000977497 |
Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_344 | 4 | 10 | 0.0000796543 |
Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_1316 | 3 | 3 | 0.000575625 |
Solanum lycopersicum | SL4.0ch05 | 4 | CH_sly_481 | 4 | 6 | 0.000332999 |
Selenicereus undatus | Scaffold_33680 | 4 | CH_sun_130 | 4 | 9 | 0.000194173 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000244 | spliceosomal tri-snRNP complex assembly | 20 |
GO:0000245 | spliceosomal complex assembly | 24 |
GO:0000350 | generation of catalytic spliceosome for second transesterification step | 6 |
GO:0000354 | cis assembly of pre-catalytic spliceosome | 2 |
GO:0000380 | alternative mRNA splicing, via spliceosome | 2 |
GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 4 |
GO:0000387 | spliceosomal snRNP assembly | 2 |
GO:0000395 | mRNA 5'-splice site recognition | 2 |
GO:0006376 | mRNA splice site selection | 8 |
GO:0045292 | mRNA cis splicing, via spliceosome | 22 |
GO:0048026 | positive regulation of mRNA splicing, via spliceosome | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |