Functional clusters

Information

  • Type Gene Ontology
  • Description mRNA splicing, via spliceosome

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR03 3 CH_aox_203 4 5 0.000121548
Amborella trichopoda AmTr_v1.0_scaffold00060 3 CH_atr_169 4 5 0.0000218962
Eucalyptus grandis Chr07 3 CH_egr_698 4 7 0.0000610793
Nelumbo nucifera chr2 3 CH_nnu_323 3 3 0.000793247
Quercus lobata 4 3 CH_qlo_1037 4 9 0.000931064
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_782 3 3 0.000977497
Salvia bowleyana GWHASIU00000002 3 CH_sbo_344 4 10 0.0000796543
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_1316 3 3 0.000575625
Solanum lycopersicum SL4.0ch05 3 CH_sly_481 4 6 0.000332999
Selenicereus undatus Scaffold_33680 3 CH_sun_130 4 9 0.000194173
Aquilegia oxysepala CHR03 4 CH_aox_203 4 5 0.000121548
Amborella trichopoda AmTr_v1.0_scaffold00060 4 CH_atr_169 4 5 0.0000218962
Eucalyptus grandis Chr07 4 CH_egr_698 4 7 0.0000610793
Nelumbo nucifera chr2 4 CH_nnu_323 3 3 0.000793247
Quercus lobata 4 4 CH_qlo_1037 4 9 0.000931064
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_782 3 3 0.000977497
Salvia bowleyana GWHASIU00000002 4 CH_sbo_344 4 10 0.0000796543
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_1316 3 3 0.000575625
Solanum lycopersicum SL4.0ch05 4 CH_sly_481 4 6 0.000332999
Selenicereus undatus Scaffold_33680 4 CH_sun_130 4 9 0.000194173

Available child term results

Ontology identifier Description Number of clusters
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000380 alternative mRNA splicing, via spliceosome 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0006376 mRNA splice site selection 8
GO:0045292 mRNA cis splicing, via spliceosome 22
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001