Functional clusters
Information
- Type Gene Ontology
- Description pectin biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Oryza sativa ssp. japonica | chr04 | 3 | CH_osa_61 | 5 | 6 | 0.0000000000219989 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_428 | 5 | 13 | 0.000000000840737 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_790 | 3 | 3 | 0.00000405821 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_791 | 3 | 3 | 0.00000405821 |
| Zea mays | 2 | 3 | CH_zma_109 | 4 | 5 | 0.000000298525 |
| Oryza sativa ssp. japonica | chr04 | 4 | CH_osa_61 | 5 | 6 | 0.0000000000219989 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_428 | 5 | 13 | 0.000000000840737 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_790 | 3 | 3 | 0.00000405821 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_791 | 3 | 3 | 0.00000405821 |
| Zea mays | 2 | 4 | CH_zma_109 | 4 | 5 | 0.000000298525 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0010306 | rhamnogalacturonan II biosynthetic process | 6 |
| GO:0048358 | mucilage pectin biosynthetic process | 4 |
| GO:1900030 | regulation of pectin biosynthetic process | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |