Functional clusters

Information

  • Type Gene Ontology
  • Description cell wall macromolecule metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Solanum tuberosum ST4.03ch02 3 CH_stu_392 4 5 0.000054258
Solanum tuberosum ST4.03ch02 4 CH_stu_392 4 5 0.000054258

Available child term results

Ontology identifier Description Number of clusters
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0009969 xyloglucan biosynthetic process 4
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010383 cell wall polysaccharide metabolic process 26
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010405 arabinogalactan protein metabolic process 4
GO:0010406 classical arabinogalactan protein metabolic process 8
GO:0010407 non-classical arabinogalactan protein metabolic process 4
GO:0010409 extensin metabolic process 2
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010412 mannan metabolic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0016998 cell wall macromolecule catabolic process 8
GO:0045492 xylan biosynthetic process 18
GO:0045493 xylan catabolic process 76
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:1990937 xylan acetylation 10
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001