Functional clusters
Information
- Type Gene Ontology
- Description salicylic acid biosynthetic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Camellia sinensis var. sinensis | Chr10 | 3 | CH_camsi_541 | 3 | 7 | 0.0000617586 |
Daucus carota | DCARv2_Chr2 | 3 | CH_dca_129 | 4 | 9 | 0.000000299511 |
Daucus carota | DCARv2_Chr7 | 3 | CH_dca_177 | 3 | 3 | 0.00000497887 |
Eucalyptus grandis | Chr06 | 3 | CH_egr_162 | 6 | 8 | 7.42344e-16 |
Helianthus annuus | HanXRQChr04 | 3 | CH_han_434 | 3 | 5 | 0.0000297746 |
Lotus japonicus | chr3 | 3 | CH_lja_141 | 3 | 3 | 0.00000168747 |
Lactuca sativa | Lsat_1_v8_lg_6 | 3 | CH_lsa_118 | 4 | 4 | 0.000000000741536 |
Oryza sativa ssp. japonica | chr08 | 3 | CH_osa_211 | 3 | 5 | 0.00000351338 |
Populus trichocarpa | Chr03 | 3 | CH_ptr_238 | 3 | 3 | 0.00000110251 |
Quercus lobata | 7 | 3 | CH_qlo_313 | 4 | 5 | 0.00000000206603 |
Quercus lobata | 11 | 3 | CH_qlo_593 | 3 | 4 | 0.0000058203 |
Rhododendron simsii | chr09 | 3 | CH_rsi_270 | 3 | 4 | 0.00000299772 |
Sequoiadendron giganteum | chr7 | 3 | CH_sgi_390 | 5 | 7 | 0.000000000150571 |
Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_22 | 5 | 5 | 0.000000000000195078 |
Camellia sinensis var. sinensis | Chr10 | 4 | CH_camsi_541 | 3 | 7 | 0.0000617586 |
Daucus carota | DCARv2_Chr2 | 4 | CH_dca_129 | 4 | 9 | 0.000000299511 |
Daucus carota | DCARv2_Chr7 | 4 | CH_dca_177 | 3 | 3 | 0.00000497887 |
Eucalyptus grandis | Chr06 | 4 | CH_egr_162 | 6 | 8 | 7.42344e-16 |
Helianthus annuus | HanXRQChr04 | 4 | CH_han_434 | 3 | 5 | 0.0000297746 |
Lotus japonicus | chr3 | 4 | CH_lja_141 | 3 | 3 | 0.00000168747 |
Lactuca sativa | Lsat_1_v8_lg_6 | 4 | CH_lsa_118 | 4 | 4 | 0.000000000741536 |
Oryza sativa ssp. japonica | chr08 | 4 | CH_osa_211 | 3 | 5 | 0.00000351338 |
Populus trichocarpa | Chr03 | 4 | CH_ptr_238 | 3 | 3 | 0.00000110251 |
Quercus lobata | 7 | 4 | CH_qlo_313 | 4 | 5 | 0.00000000206603 |
Quercus lobata | 11 | 4 | CH_qlo_593 | 3 | 4 | 0.0000058203 |
Rhododendron simsii | chr09 | 4 | CH_rsi_270 | 3 | 4 | 0.00000299772 |
Sequoiadendron giganteum | chr7 | 4 | CH_sgi_390 | 5 | 7 | 0.000000000150571 |
Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_22 | 5 | 5 | 0.000000000000195078 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0080142 | regulation of salicylic acid biosynthetic process | 10 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |