Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of gene expression

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Daucus carota DCARv2_Chr2 3 CH_dca_399 4 5 0.000824603
Daucus carota DCARv2_Chr2 4 CH_dca_399 4 5 0.000824603

Available child term results

Ontology identifier Description Number of clusters
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 18
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006342 chromatin silencing 16
GO:0006348 chromatin silencing at telomere 6
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0016458 gene silencing 4
GO:0030422 production of siRNA involved in RNA interference 2
GO:0031047 gene silencing by RNA 4
GO:0031054 pre-miRNA processing 2
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 30
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032055 negative regulation of translation in response to stress 2
GO:0035194 post-transcriptional gene silencing by RNA 2
GO:0035195 gene silencing by miRNA 4
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0045814 negative regulation of gene expression, epigenetic 2
GO:0048255 mRNA stabilization 4
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0060966 regulation of gene silencing by RNA 2
GO:0060968 regulation of gene silencing 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 2
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA 2
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 26
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0080149 sucrose induced translational repression 2
GO:0080188 gene silencing by RNA-directed DNA methylation 42
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900368 regulation of RNA interference 2
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 22
GO:2000636 positive regulation of primary miRNA processing 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001