Functional clusters
Information
- Type Gene Ontology
- Description diterpenoid biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr2 | 3 | CH_acertr_58 | 5 | 8 | 0.000000000210818 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 3 | CH_arhy_629 | 3 | 4 | 0.000475837 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 3 | CH_atr_54 | 6 | 29 | 0.000000000268522 |
| Brassica carinata | ChrB03 | 3 | CH_bca_447 | 3 | 3 | 0.0000151481 |
| Corylus avellana | 1 | 3 | CH_cav_39 | 6 | 8 | 0.000000000000628058 |
| Cardamine hirsuta | Chr7 | 3 | CH_chi_121 | 4 | 5 | 0.000000117577 |
| Carya illinoinensis | Chr10 | 3 | CH_cil_478 | 3 | 3 | 0.000473487 |
| Citrullus lanatus | CG_Chr10 | 3 | CH_cla_44 | 4 | 7 | 0.000000187807 |
| Citrullus lanatus | CG_Chr10 | 3 | CH_cla_94 | 3 | 4 | 0.0000627628 |
| Erythranthe guttata | scaffold_13 | 3 | CH_egut_159 | 5 | 9 | 0.0000000686529 |
| Erythranthe guttata | scaffold_2 | 3 | CH_egut_318 | 3 | 3 | 0.000175767 |
| Gossypium hirsutum | A10 | 3 | CH_ghi_241 | 4 | 4 | 0.00000022396 |
| Gossypium hirsutum | D05 | 3 | CH_ghi_242 | 4 | 4 | 0.00000022396 |
| Gossypium hirsutum | D09 | 3 | CH_ghi_243 | 4 | 4 | 0.00000022396 |
| Gossypium hirsutum | A09 | 3 | CH_ghi_312 | 4 | 6 | 0.00000335242 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_32 | 10 | 14 | 8.44011e-22 |
| Gossypium hirsutum | A01 | 3 | CH_ghi_486 | 3 | 3 | 0.000172934 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_487 | 3 | 3 | 0.000172934 |
| Gossypium hirsutum | D05 | 3 | CH_ghi_63 | 8 | 13 | 7.26246e-16 |
| Gossypium raimondii | Chr09 | 3 | CH_gra_22 | 8 | 9 | 5.95876e-18 |
| Gossypium raimondii | Chr02 | 3 | CH_gra_234 | 3 | 3 | 0.000126148 |
| Malus domestica | Chr11 | 3 | CH_mdo_386 | 5 | 46 | 0.0000317136 |
| Malus domestica | Chr00 | 3 | CH_mdo_390 | 3 | 3 | 0.0000349768 |
| Manihot esculenta | Chromosome02 | 3 | CH_mes_170 | 4 | 4 | 0.000000200035 |
| Manihot esculenta | Chromosome15 | 3 | CH_mes_230 | 4 | 7 | 0.00000697547 |
| Medicago truncatula | chr2 | 3 | CH_mtr_292 | 4 | 6 | 0.000000127595 |
| Olea europaea | chr21 | 3 | CH_oeu_255 | 3 | 4 | 0.000210811 |
| Oryza sativa ssp. japonica | chr02 | 3 | CH_osa_7 | 11 | 16 | 1.56051e-25 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_295 | 3 | 3 | 0.000136949 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_154 | 3 | 3 | 0.00000465308 |
| Populus trichocarpa | Chr19 | 3 | CH_ptr_187 | 4 | 4 | 0.0000000586714 |
| Populus trichocarpa | Chr07 | 3 | CH_ptr_99 | 6 | 10 | 0.0000000000136609 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_534 | 4 | 14 | 0.0000643531 |
| Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_447 | 3 | 4 | 0.000424613 |
| Salix brachista | GWHAAZH00000019 | 3 | CH_sbr_345 | 4 | 34 | 0.000599896 |
| Sechium edule | LG01 | 3 | CH_sed_27 | 9 | 52 | 0.00000000000000151696 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_593 | 6 | 15 | 0.0000000807429 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_237 | 3 | 3 | 0.0000147195 |
| Solanum pennellii | Spenn-ch06 | 3 | CH_spe_55 | 7 | 36 | 0.000000000016884 |
| Tripterygium wilfordii | NC_052247.1 | 3 | CH_twi_265 | 3 | 3 | 0.000266833 |
| Vitis vinifera | chr19 | 3 | CH_vvi_289 | 3 | 3 | 0.0000996314 |
| Acer truncatum | chr2 | 4 | CH_acertr_58 | 5 | 8 | 0.000000000210818 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 4 | CH_arhy_629 | 3 | 4 | 0.000475837 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 4 | CH_atr_54 | 6 | 29 | 0.000000000268522 |
| Brassica carinata | ChrB03 | 4 | CH_bca_447 | 3 | 3 | 0.0000151481 |
| Corylus avellana | 1 | 4 | CH_cav_39 | 6 | 8 | 0.000000000000628058 |
| Cardamine hirsuta | Chr7 | 4 | CH_chi_121 | 4 | 5 | 0.000000117577 |
| Carya illinoinensis | Chr10 | 4 | CH_cil_478 | 3 | 3 | 0.000473487 |
| Citrullus lanatus | CG_Chr10 | 4 | CH_cla_44 | 4 | 7 | 0.000000187807 |
| Citrullus lanatus | CG_Chr10 | 4 | CH_cla_94 | 3 | 4 | 0.0000627628 |
| Erythranthe guttata | scaffold_13 | 4 | CH_egut_159 | 5 | 9 | 0.0000000686529 |
| Erythranthe guttata | scaffold_2 | 4 | CH_egut_318 | 3 | 3 | 0.000175767 |
| Gossypium hirsutum | A10 | 4 | CH_ghi_241 | 4 | 4 | 0.00000022396 |
| Gossypium hirsutum | D05 | 4 | CH_ghi_242 | 4 | 4 | 0.00000022396 |
| Gossypium hirsutum | D09 | 4 | CH_ghi_243 | 4 | 4 | 0.00000022396 |
| Gossypium hirsutum | A09 | 4 | CH_ghi_312 | 4 | 6 | 0.00000335242 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_32 | 10 | 14 | 8.44011e-22 |
| Gossypium hirsutum | A01 | 4 | CH_ghi_486 | 3 | 3 | 0.000172934 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_487 | 3 | 3 | 0.000172934 |
| Gossypium hirsutum | D05 | 4 | CH_ghi_63 | 8 | 13 | 7.26246e-16 |
| Gossypium raimondii | Chr09 | 4 | CH_gra_22 | 8 | 9 | 5.95876e-18 |
| Gossypium raimondii | Chr02 | 4 | CH_gra_234 | 3 | 3 | 0.000126148 |
| Malus domestica | Chr11 | 4 | CH_mdo_386 | 5 | 46 | 0.0000317136 |
| Malus domestica | Chr00 | 4 | CH_mdo_390 | 3 | 3 | 0.0000349768 |
| Manihot esculenta | Chromosome02 | 4 | CH_mes_170 | 4 | 4 | 0.000000200035 |
| Manihot esculenta | Chromosome15 | 4 | CH_mes_230 | 4 | 7 | 0.00000697547 |
| Medicago truncatula | chr2 | 4 | CH_mtr_292 | 4 | 6 | 0.000000127595 |
| Olea europaea | chr21 | 4 | CH_oeu_255 | 3 | 4 | 0.000210811 |
| Oryza sativa ssp. japonica | chr02 | 4 | CH_osa_7 | 11 | 16 | 1.56051e-25 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_295 | 3 | 3 | 0.000136949 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_154 | 3 | 3 | 0.00000465308 |
| Populus trichocarpa | Chr19 | 4 | CH_ptr_187 | 4 | 4 | 0.0000000586714 |
| Populus trichocarpa | Chr07 | 4 | CH_ptr_99 | 6 | 10 | 0.0000000000136609 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_534 | 4 | 14 | 0.0000643531 |
| Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_447 | 3 | 4 | 0.000424613 |
| Salix brachista | GWHAAZH00000019 | 4 | CH_sbr_345 | 4 | 34 | 0.000599896 |
| Sechium edule | LG01 | 4 | CH_sed_27 | 9 | 52 | 0.00000000000000151696 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_593 | 6 | 15 | 0.0000000807429 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_237 | 3 | 3 | 0.0000147195 |
| Solanum pennellii | Spenn-ch06 | 4 | CH_spe_55 | 7 | 36 | 0.000000000016884 |
| Tripterygium wilfordii | NC_052247.1 | 4 | CH_twi_265 | 3 | 3 | 0.000266833 |
| Vitis vinifera | chr19 | 4 | CH_vvi_289 | 3 | 3 | 0.0000996314 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009686 | gibberellin biosynthetic process | 2 |
| GO:0010371 | regulation of gibberellin biosynthetic process | 32 |
| GO:0010372 | positive regulation of gibberellin biosynthetic process | 2 |
| GO:0051502 | diterpene phytoalexin biosynthetic process | 16 |
| GO:1904964 | positive regulation of phytol biosynthetic process | 12 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |