Functional clusters
Information
- Type Gene Ontology
- Description lignin biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_264 | 3 | 4 | 0.000258022 |
| Camellia sinensis var. sinensis | Chr4 | 3 | CH_camsi_273 | 5 | 11 | 0.000000197952 |
| Cardamine hirsuta | Chr7 | 3 | CH_chi_240 | 3 | 3 | 0.000076397 |
| Carica papaya | supercontig_129 | 3 | CH_cpa_287 | 3 | 5 | 0.000885197 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2081 | 3 | CH_cqu_511 | 3 | 4 | 0.000674303 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_232 | 3 | 3 | 0.0000854836 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_252 | 7 | 13 | 0.00000000000645015 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_483 | 4 | 16 | 0.000313051 |
| Manihot esculenta | Chromosome13 | 3 | CH_mes_183 | 4 | 4 | 0.000000381076 |
| Quercus lobata | 6 | 3 | CH_qlo_794 | 3 | 3 | 0.000129985 |
| Schrenkiella parvula | ch7-6 | 3 | CH_spa_132 | 3 | 3 | 0.000106752 |
| Tripterygium wilfordii | NC_052247.1 | 3 | CH_twi_334 | 3 | 4 | 0.000853387 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_264 | 3 | 4 | 0.000258022 |
| Camellia sinensis var. sinensis | Chr4 | 4 | CH_camsi_273 | 5 | 11 | 0.000000197952 |
| Cardamine hirsuta | Chr7 | 4 | CH_chi_240 | 3 | 3 | 0.000076397 |
| Carica papaya | supercontig_129 | 4 | CH_cpa_287 | 3 | 5 | 0.000885197 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2081 | 4 | CH_cqu_511 | 3 | 4 | 0.000674303 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_232 | 3 | 3 | 0.0000854836 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_252 | 7 | 13 | 0.00000000000645015 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_483 | 4 | 16 | 0.000313051 |
| Manihot esculenta | Chromosome13 | 4 | CH_mes_183 | 4 | 4 | 0.000000381076 |
| Quercus lobata | 6 | 4 | CH_qlo_794 | 3 | 3 | 0.000129985 |
| Schrenkiella parvula | ch7-6 | 4 | CH_spa_132 | 3 | 3 | 0.000106752 |
| Tripterygium wilfordii | NC_052247.1 | 4 | CH_twi_334 | 3 | 4 | 0.000853387 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1901430 | positive regulation of syringal lignin biosynthetic process | 14 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |