Functional clusters

Information

  • Type Gene Ontology
  • Description organonitrogen compound catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C07 3 CH_bna_372 9 35 0.0000190373
Camellia sinensis var. sinensis Chr3 3 CH_camsi_656 5 7 0.000240068
Oryza sativa ssp. japonica chr04 3 CH_osa_325 10 41 0.000135274
Zea mays 4 3 CH_zma_282 10 32 0.000453086
Brassica napus C07 4 CH_bna_372 9 35 0.0000190373
Camellia sinensis var. sinensis Chr3 4 CH_camsi_656 5 7 0.000240068
Oryza sativa ssp. japonica chr04 4 CH_osa_325 10 41 0.000135274
Zea mays 4 4 CH_zma_282 10 32 0.000453086

Available child term results

Ontology identifier Description Number of clusters
GO:0000256 allantoin catabolic process 2
GO:0002084 protein depalmitoylation 6
GO:0006032 chitin catabolic process 250
GO:0006148 inosine catabolic process 18
GO:0006154 adenosine catabolic process 38
GO:0006210 thymine catabolic process 10
GO:0006511 ubiquitin-dependent protein catabolic process 154
GO:0006516 glycoprotein catabolic process 2
GO:0006559 L-phenylalanine catabolic process 6
GO:0006562 proline catabolic process 4
GO:0006569 tryptophan catabolic process 18
GO:0006572 tyrosine catabolic process 6
GO:0006574 valine catabolic process 4
GO:0006680 glucosylceramide catabolic process 10
GO:0006788 heme oxidation 2
GO:0009440 cyanate catabolic process 4
GO:0009447 putrescine catabolic process 8
GO:0009972 cytidine deamination 8
GO:0010133 proline catabolic process to glutamate 4
GO:0010304 PSII associated light-harvesting complex II catabolic process 2
GO:0010498 proteasomal protein catabolic process 2
GO:0015938 coenzyme A catabolic process 2
GO:0016598 protein arginylation 2
GO:0019447 D-cysteine catabolic process 12
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019464 glycine decarboxylation via glycine cleavage system 4
GO:0019481 L-alanine catabolic process, by transamination 8
GO:0019544 arginine catabolic process to glutamate 2
GO:0019762 glucosinolate catabolic process 12
GO:0030163 protein catabolic process 6
GO:0030327 prenylated protein catabolic process 12
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 6
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0042167 heme catabolic process 4
GO:0042177 negative regulation of protein catabolic process 14
GO:0042344 indole glucosinolate catabolic process 2
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 14
GO:0043419 urea catabolic process 4
GO:0044257 cellular protein catabolic process 2
GO:0045732 positive regulation of protein catabolic process 2
GO:0046203 spermidine catabolic process 2
GO:0046514 ceramide catabolic process 6
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 26
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072523 purine-containing compound catabolic process 2
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901606 alpha-amino acid catabolic process 8
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:1903647 negative regulation of chlorophyll catabolic process 10
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 12
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001