Functional clusters
Information
- Type Gene Ontology
- Description positive regulation of transcription by RNA polymerase II
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 3 | CH_arhy_599 | 3 | 3 | 0.000406866 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 3 | CH_arhy_600 | 3 | 3 | 0.000406866 |
| Camellia sinensis var. sinensis | Chr13 | 3 | CH_camsi_413 | 6 | 45 | 0.00000769274 |
| Carpinus fangiana | Cfa02 | 3 | CH_cfa_195 | 5 | 28 | 0.0000236552 |
| Carya illinoinensis | Chr04 | 3 | CH_cil_214 | 5 | 10 | 0.000000415359 |
| Daucus carota | DCARv2_Chr2 | 3 | CH_dca_54 | 5 | 5 | 0.000000000262965 |
| Hydrangea macrophylla | Hma1.2p1_0010F.1 | 3 | CH_hma_315 | 3 | 5 | 0.000749786 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_208 | 4 | 4 | 0.0000000231732 |
| Populus trichocarpa | Chr03 | 3 | CH_ptr_141 | 5 | 5 | 0.0000000030936 |
| Populus trichocarpa | Chr07 | 3 | CH_ptr_416 | 3 | 3 | 0.000531186 |
| Simmondsia chinensis | GWHAASQ00000018 | 3 | CH_sci_103 | 4 | 6 | 0.00000637682 |
| Simmondsia chinensis | GWHAASQ00000008 | 3 | CH_sci_93 | 4 | 5 | 0.00000212903 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_1312 | 4 | 28 | 0.000574308 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_354 | 6 | 13 | 0.0000000000343972 |
| Trochodendron aralioides | group5 | 3 | CH_tar_158 | 4 | 4 | 0.000000747039 |
| Trochodendron aralioides | group17 | 3 | CH_tar_239 | 5 | 21 | 0.0000310597 |
| Vitis vinifera | chr3 | 3 | CH_vvi_231 | 4 | 7 | 0.000016891 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 4 | CH_arhy_599 | 3 | 3 | 0.000406866 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 4 | CH_arhy_600 | 3 | 3 | 0.000406866 |
| Camellia sinensis var. sinensis | Chr13 | 4 | CH_camsi_413 | 6 | 45 | 0.00000769274 |
| Carpinus fangiana | Cfa02 | 4 | CH_cfa_195 | 5 | 28 | 0.0000236552 |
| Carya illinoinensis | Chr04 | 4 | CH_cil_214 | 5 | 10 | 0.000000415359 |
| Daucus carota | DCARv2_Chr2 | 4 | CH_dca_54 | 5 | 5 | 0.000000000262965 |
| Hydrangea macrophylla | Hma1.2p1_0010F.1 | 4 | CH_hma_315 | 3 | 5 | 0.000749786 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_208 | 4 | 4 | 0.0000000231732 |
| Populus trichocarpa | Chr03 | 4 | CH_ptr_141 | 5 | 5 | 0.0000000030936 |
| Populus trichocarpa | Chr07 | 4 | CH_ptr_416 | 3 | 3 | 0.000531186 |
| Simmondsia chinensis | GWHAASQ00000018 | 4 | CH_sci_103 | 4 | 6 | 0.00000637682 |
| Simmondsia chinensis | GWHAASQ00000008 | 4 | CH_sci_93 | 4 | 5 | 0.00000212903 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_1312 | 4 | 28 | 0.000574308 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_354 | 6 | 13 | 0.0000000000343972 |
| Trochodendron aralioides | group5 | 4 | CH_tar_158 | 4 | 4 | 0.000000747039 |
| Trochodendron aralioides | group17 | 4 | CH_tar_239 | 5 | 21 | 0.0000310597 |
| Vitis vinifera | chr3 | 4 | CH_vvi_231 | 4 | 7 | 0.000016891 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006990 | positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response | 6 |
| GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | 32 |
| GO:0060261 | positive regulation of transcription initiation from RNA polymerase II promoter | 16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |