Functional clusters
Information
- Type Gene Ontology
- Description tRNA processing
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Sequoiadendron giganteum | chr7 | 3 | CH_sgi_725 | 4 | 7 | 0.00000122665 |
Sequoiadendron giganteum | chr7 | 4 | CH_sgi_725 | 4 | 7 | 0.00000122665 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0002100 | tRNA wobble adenosine to inosine editing | 4 |
GO:0002940 | tRNA N2-guanine methylation | 2 |
GO:0002943 | tRNA dihydrouridine synthesis | 24 |
GO:0002949 | tRNA threonylcarbamoyladenosine modification | 8 |
GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | 8 |
GO:0006400 | tRNA modification | 14 |
GO:0019988 | charged-tRNA amino acid modification | 12 |
GO:0030488 | tRNA methylation | 2 |
GO:0031119 | tRNA pseudouridine synthesis | 10 |
GO:0034227 | tRNA thio-modification | 12 |
GO:0034414 | tRNA 3'-trailer cleavage, endonucleolytic | 4 |
GO:0035600 | tRNA methylthiolation | 2 |
GO:0042779 | tRNA 3'-trailer cleavage | 4 |
GO:0072684 | mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 2 |
GO:0080178 | 5-carbamoylmethyl uridine residue modification | 2 |
GO:0101030 | tRNA-guanine transglycosylation | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |