Functional clusters
Information
- Type Gene Ontology
- Description mRNA cis splicing, via spliceosome
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC05 | 3 | CH_bca_509 | 3 | 4 | 0.0000416048 |
| Brassica oleracea | C8 | 3 | CH_bol_37 | 5 | 5 | 0.000000000000691184 |
| Capsicum annuum | PGAv.1.6.scaffold309 | 3 | CH_can_1 | 30 | 48 | 1.95709e-60 |
| Capsicum annuum | PGAv.1.6.scaffold575 | 3 | CH_can_197 | 7 | 41 | 0.00000178498 |
| Capsicum annuum | PGAv.1.6.scaffold1353 | 3 | CH_can_4 | 19 | 30 | 1.20704e-36 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 3 | CH_can_46 | 10 | 19 | 2.15382e-16 |
| Coffea canephora | chr9 | 3 | CH_ccan_198 | 3 | 28 | 0.000032428 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_46 | 5 | 6 | 0.0000000000029247 |
| Malus domestica | Chr05 | 3 | CH_mdo_305 | 3 | 3 | 0.00000286889 |
| Quercus lobata | 12 | 3 | CH_qlo_473 | 3 | 3 | 0.000000335867 |
| Vanilla planifolia | CM028158.1 | 3 | CH_vpl_32 | 5 | 11 | 0.0000000000816887 |
| Brassica carinata | ChrC05 | 4 | CH_bca_509 | 3 | 4 | 0.0000416048 |
| Brassica oleracea | C8 | 4 | CH_bol_37 | 5 | 5 | 0.000000000000691184 |
| Capsicum annuum | PGAv.1.6.scaffold309 | 4 | CH_can_1 | 30 | 48 | 1.95709e-60 |
| Capsicum annuum | PGAv.1.6.scaffold575 | 4 | CH_can_197 | 7 | 41 | 0.00000178498 |
| Capsicum annuum | PGAv.1.6.scaffold1353 | 4 | CH_can_4 | 19 | 30 | 1.20704e-36 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 4 | CH_can_46 | 10 | 19 | 2.15382e-16 |
| Coffea canephora | chr9 | 4 | CH_ccan_198 | 3 | 28 | 0.000032428 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_46 | 5 | 6 | 0.0000000000029247 |
| Malus domestica | Chr05 | 4 | CH_mdo_305 | 3 | 3 | 0.00000286889 |
| Quercus lobata | 12 | 4 | CH_qlo_473 | 3 | 3 | 0.000000335867 |
| Vanilla planifolia | CM028158.1 | 4 | CH_vpl_32 | 5 | 11 | 0.0000000000816887 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000354 | cis assembly of pre-catalytic spliceosome | 2 |
| GO:0000395 | mRNA 5'-splice site recognition | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |