Functional clusters
Information
- Type Gene Ontology
- Description nicotianamine biosynthetic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 3 | CH_acertr_386 | 2 | 2 | 0.000211491 |
| Brassica carinata | ChrC06 | 3 | CH_bca_102 | 4 | 5 | 0.000000000199985 |
| Capsicum annuum | PGAv.1.6.scaffold1076 | 3 | CH_can_312 | 2 | 2 | 0.0000826105 |
| Citrus clementina | scaffold_1 | 3 | CH_ccl_96 | 4 | 6 | 0.000000000124196 |
| Cucumis melo | chr05 | 3 | CH_cme_239 | 2 | 2 | 0.000400267 |
| Cucumis sativus L. | chr2 | 3 | CH_csa_254 | 2 | 2 | 0.000500856 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_327 | 2 | 2 | 0.000134617 |
| Lupinus albus | Lalb_Chr21 | 3 | CH_lal_55 | 4 | 4 | 0.0000000000303595 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_427 | 2 | 2 | 0.000308404 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_257 | 3 | 8 | 0.000000792362 |
| Malus domestica | Chr13 | 3 | CH_mdo_545 | 2 | 2 | 0.000227527 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_352 | 2 | 2 | 0.000158437 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_152 | 5 | 16 | 0.000000000447464 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_359 | 3 | 4 | 0.0000070032 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_427 | 3 | 6 | 0.0000350022 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_657 | 3 | 14 | 0.000636036 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_396 | 2 | 2 | 0.000346801 |
| Salix brachista | GWHAAZH00000004 | 3 | CH_sbr_98 | 4 | 11 | 0.00000000866421 |
| Zea mays | 9 | 3 | CH_zma_22 | 6 | 16 | 0.0000000000000132123 |
| Acer truncatum | chr7 | 4 | CH_acertr_386 | 2 | 2 | 0.000211491 |
| Brassica carinata | ChrC06 | 4 | CH_bca_102 | 4 | 5 | 0.000000000199985 |
| Capsicum annuum | PGAv.1.6.scaffold1076 | 4 | CH_can_312 | 2 | 2 | 0.0000826105 |
| Citrus clementina | scaffold_1 | 4 | CH_ccl_96 | 4 | 6 | 0.000000000124196 |
| Cucumis melo | chr05 | 4 | CH_cme_239 | 2 | 2 | 0.000400267 |
| Cucumis sativus L. | chr2 | 4 | CH_csa_254 | 2 | 2 | 0.000500856 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_327 | 2 | 2 | 0.000134617 |
| Lupinus albus | Lalb_Chr21 | 4 | CH_lal_55 | 4 | 4 | 0.0000000000303595 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_427 | 2 | 2 | 0.000308404 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_257 | 3 | 8 | 0.000000792362 |
| Malus domestica | Chr13 | 4 | CH_mdo_545 | 2 | 2 | 0.000227527 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_352 | 2 | 2 | 0.000158437 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_152 | 5 | 16 | 0.000000000447464 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_359 | 3 | 4 | 0.0000070032 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_427 | 3 | 6 | 0.0000350022 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_657 | 3 | 14 | 0.000636036 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_396 | 2 | 2 | 0.000346801 |
| Salix brachista | GWHAAZH00000004 | 4 | CH_sbr_98 | 4 | 11 | 0.00000000866421 |
| Zea mays | 9 | 4 | CH_zma_22 | 6 | 16 | 0.0000000000000132123 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |