Functional clusters
Information
- Type Gene Ontology
- Description RNA splicing, via transesterification reactions
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica carinata | ChrC03 | 3 | CH_bca_93 | 6 | 10 | 0.0000000000560269 |
Brassica napus | C02 | 3 | CH_bna_241 | 4 | 5 | 0.00000102243 |
Brassica carinata | ChrC03 | 4 | CH_bca_93 | 6 | 10 | 0.0000000000560269 |
Brassica napus | C02 | 4 | CH_bna_241 | 4 | 5 | 0.00000102243 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000244 | spliceosomal tri-snRNP complex assembly | 20 |
GO:0000245 | spliceosomal complex assembly | 24 |
GO:0000350 | generation of catalytic spliceosome for second transesterification step | 6 |
GO:0000354 | cis assembly of pre-catalytic spliceosome | 2 |
GO:0000372 | Group I intron splicing | 10 |
GO:0000373 | Group II intron splicing | 14 |
GO:0000380 | alternative mRNA splicing, via spliceosome | 2 |
GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 4 |
GO:0000387 | spliceosomal snRNP assembly | 2 |
GO:0000395 | mRNA 5'-splice site recognition | 2 |
GO:0000398 | mRNA splicing, via spliceosome | 20 |
GO:0006376 | mRNA splice site selection | 8 |
GO:0045292 | mRNA cis splicing, via spliceosome | 22 |
GO:0048026 | positive regulation of mRNA splicing, via spliceosome | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |