Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of mRNA metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carica papaya supercontig_10 3 CH_cpa_286 3 8 0.000862653
Davidia involucrata GWHABJS00000013 3 CH_din_339 3 5 0.000342412
Glycine max Gm15 3 CH_gma_355 3 5 0.000202346
Glycine max Gm08 3 CH_gma_356 3 4 0.000202346
Lupinus albus Lalb_Chr20 3 CH_lal_259 3 3 0.0000809816
Lupinus albus Lalb_Chr25 3 CH_lal_345 3 4 0.000323618
Medicago truncatula chr2 3 CH_mtr_518 3 5 0.0000657873
Pisum sativum chr1LG6 3 CH_psa_304 3 6 0.000297809
Phaseolus vulgaris Chr05 3 CH_pvu_274 3 5 0.000210257
Trifolium pratense Tp57577_TGAC_v2_LG7 3 CH_tpr_239 3 4 0.000112551
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_373 3 6 0.000846337
Carica papaya supercontig_10 4 CH_cpa_286 3 8 0.000862653
Davidia involucrata GWHABJS00000013 4 CH_din_339 3 5 0.000342412
Glycine max Gm15 4 CH_gma_355 3 5 0.000202346
Glycine max Gm08 4 CH_gma_356 3 4 0.000202346
Lupinus albus Lalb_Chr20 4 CH_lal_259 3 3 0.0000809816
Lupinus albus Lalb_Chr25 4 CH_lal_345 3 4 0.000323618
Medicago truncatula chr2 4 CH_mtr_518 3 5 0.0000657873
Pisum sativum chr1LG6 4 CH_psa_304 3 6 0.000297809
Phaseolus vulgaris Chr05 4 CH_pvu_274 3 5 0.000210257
Trifolium pratense Tp57577_TGAC_v2_LG7 4 CH_tpr_239 3 4 0.000112551
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_373 3 6 0.000846337

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0048255 mRNA stabilization 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900363 regulation of mRNA polyadenylation 2
GO:1900364 negative regulation of mRNA polyadenylation 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001