Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of DNA-templated transcription, initiation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 3 CH_acertr_437 2 2 0.000422982
Arabidopsis lyrata scaffold_7 3 CH_aly_358 2 2 0.000990066
Arabidopsis thaliana Chr5 3 CH_ath_551 2 2 0.000429738
Cannabis sativa NC_044379.1 3 CH_cansat_209 2 2 0.0000656642
Corylus avellana 5 3 CH_cav_324 2 2 0.000230008
Carpinus fangiana Cfa03 3 CH_cfa_259 2 2 0.000227204
Cardamine hirsuta Chr7 3 CH_chi_369 2 2 0.000691204
Carya illinoinensis Chr03 3 CH_cil_453 2 2 0.000371897
Durio zibethinus NW_019167960.1 3 CH_dzi_182 3 10 0.0000216379
Eucalyptus grandis Chr09 3 CH_egr_771 2 2 0.000175582
Fragaria vesca Fvb6 3 CH_fve_359 2 2 0.000589102
Gossypium raimondii Chr11 3 CH_gra_355 2 2 0.00080416
Gossypium raimondii Chr06 3 CH_gra_356 2 2 0.00080416
Malus domestica Chr17 3 CH_mdo_635 2 2 0.000568817
Malus domestica Chr09 3 CH_mdo_636 2 2 0.000568817
Manihot esculenta Chromosome17 3 CH_mes_408 2 2 0.000610631
Manihot esculenta Chromosome15 3 CH_mes_409 2 2 0.000610631
Punica granatum NC_045128.1 3 CH_pgr_347 2 2 0.000450214
Prunus persica Pp03 3 CH_ppe_374 2 2 0.000223789
Quercus lobata CM012294 3 CH_qlo_830 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_635 2 2 0.000239192
Simmondsia chinensis GWHAASQ00000004 3 CH_sci_204 2 2 0.000255428
Theobroma cacao Chromosome_4 3 CH_tca_320 2 2 0.000219716
Tripterygium wilfordii NC_052237.1 3 CH_twi_273 2 2 0.000334728
Acer truncatum chr6 4 CH_acertr_437 2 2 0.000422982
Arabidopsis lyrata scaffold_7 4 CH_aly_358 2 2 0.000990066
Arabidopsis thaliana Chr5 4 CH_ath_551 2 2 0.000429738
Cannabis sativa NC_044379.1 4 CH_cansat_209 2 2 0.0000656642
Corylus avellana 5 4 CH_cav_324 2 2 0.000230008
Carpinus fangiana Cfa03 4 CH_cfa_259 2 2 0.000227204
Cardamine hirsuta Chr7 4 CH_chi_369 2 2 0.000691204
Carya illinoinensis Chr03 4 CH_cil_453 2 2 0.000371897
Durio zibethinus NW_019167960.1 4 CH_dzi_182 3 10 0.0000216379
Eucalyptus grandis Chr09 4 CH_egr_771 2 2 0.000175582
Fragaria vesca Fvb6 4 CH_fve_359 2 2 0.000589102
Gossypium raimondii Chr11 4 CH_gra_355 2 2 0.00080416
Gossypium raimondii Chr06 4 CH_gra_356 2 2 0.00080416
Malus domestica Chr17 4 CH_mdo_635 2 2 0.000568817
Malus domestica Chr09 4 CH_mdo_636 2 2 0.000568817
Manihot esculenta Chromosome17 4 CH_mes_408 2 2 0.000610631
Manihot esculenta Chromosome15 4 CH_mes_409 2 2 0.000610631
Punica granatum NC_045128.1 4 CH_pgr_347 2 2 0.000450214
Prunus persica Pp03 4 CH_ppe_374 2 2 0.000223789
Quercus lobata CM012294 4 CH_qlo_830 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_635 2 2 0.000239192
Simmondsia chinensis GWHAASQ00000004 4 CH_sci_204 2 2 0.000255428
Theobroma cacao Chromosome_4 4 CH_tca_320 2 2 0.000219716
Tripterygium wilfordii NC_052237.1 4 CH_twi_273 2 2 0.000334728

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001