Functional clusters

Information

  • Type Gene Ontology
  • Description nucleoside metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata Contig973 3 CH_bca_252 4 4 0.000000217258
Brassica napus A03 3 CH_bna_577 5 47 0.00040521
Brassica rapa A03 3 CH_bra_130 6 46 0.00000541228
Beta vulgaris Chr2_EL10_PGA_scaffold6 3 CH_bvu_163 3 3 0.0000509994
Coffea canephora chr0 3 CH_ccan_102 4 30 0.000000615065
Coffea canephora chr2 3 CH_ccan_93 4 23 0.000000189521
Carya illinoinensis Chr08 3 CH_cil_367 3 3 0.0000996766
Chenopodium quinoa C_Quinoa_Scaffold_1001 3 CH_cqu_173 4 4 0.000000292628
Chenopodium quinoa C_Quinoa_Scaffold_3107 3 CH_cqu_241 4 6 0.00000437823
Erigeron canadensis Conyza_canadensis_scaffold:9 3 CH_eca_369 3 5 0.000298025
Eucalyptus grandis Chr03 3 CH_egr_666 3 3 0.0000547747
Fragaria x ananassa Fvb2-1 3 CH_fan_428 3 3 0.000220088
Fragaria vesca Fvb2 3 CH_fve_61 5 5 0.0000000000677035
Malus domestica Chr15 3 CH_mdo_437 3 3 0.0000665583
Manihot esculenta Chromosome09 3 CH_mes_42 8 9 7.94935e-18
Medicago truncatula chr6 3 CH_mtr_585 3 4 0.000153649
Populus trichocarpa Chr08 3 CH_ptr_347 3 3 0.000146634
Populus trichocarpa Chr13 3 CH_ptr_436 3 4 0.000585834
Populus trichocarpa Chr13 3 CH_ptr_93 6 7 0.00000000000368345
Quercus lobata 4 3 CH_qlo_780 3 3 0.000104898
Salix brachista GWHAAZH00000013 3 CH_sbr_7 11 14 4.07284e-25
Sequoiadendron giganteum chr8 3 CH_sgi_109 10 16 3.76625e-21
Sequoiadendron giganteum chr8 3 CH_sgi_758 5 19 0.00000202596
Solanum pennellii Spenn-ch08 3 CH_spe_125 4 4 0.0000000325812
Trochodendron aralioides group10 3 CH_tar_138 4 4 0.000000221429
Brassica carinata Contig973 4 CH_bca_252 4 4 0.000000217258
Brassica napus A03 4 CH_bna_577 5 47 0.00040521
Brassica rapa A03 4 CH_bra_130 6 46 0.00000541228
Beta vulgaris Chr2_EL10_PGA_scaffold6 4 CH_bvu_163 3 3 0.0000509994
Coffea canephora chr0 4 CH_ccan_102 4 30 0.000000615065
Coffea canephora chr2 4 CH_ccan_93 4 23 0.000000189521
Carya illinoinensis Chr08 4 CH_cil_367 3 3 0.0000996766
Chenopodium quinoa C_Quinoa_Scaffold_1001 4 CH_cqu_173 4 4 0.000000292628
Chenopodium quinoa C_Quinoa_Scaffold_3107 4 CH_cqu_241 4 6 0.00000437823
Erigeron canadensis Conyza_canadensis_scaffold:9 4 CH_eca_369 3 5 0.000298025
Eucalyptus grandis Chr03 4 CH_egr_666 3 3 0.0000547747
Fragaria x ananassa Fvb2-1 4 CH_fan_428 3 3 0.000220088
Fragaria vesca Fvb2 4 CH_fve_61 5 5 0.0000000000677035
Malus domestica Chr15 4 CH_mdo_437 3 3 0.0000665583
Manihot esculenta Chromosome09 4 CH_mes_42 8 9 7.94935e-18
Medicago truncatula chr6 4 CH_mtr_585 3 4 0.000153649
Populus trichocarpa Chr08 4 CH_ptr_347 3 3 0.000146634
Populus trichocarpa Chr13 4 CH_ptr_436 3 4 0.000585834
Populus trichocarpa Chr13 4 CH_ptr_93 6 7 0.00000000000368345
Quercus lobata 4 4 CH_qlo_780 3 3 0.000104898
Salix brachista GWHAAZH00000013 4 CH_sbr_7 11 14 4.07284e-25
Sequoiadendron giganteum chr8 4 CH_sgi_109 10 16 3.76625e-21
Sequoiadendron giganteum chr8 4 CH_sgi_758 5 19 0.00000202596
Solanum pennellii Spenn-ch08 4 CH_spe_125 4 4 0.0000000325812
Trochodendron aralioides group10 4 CH_tar_138 4 4 0.000000221429

Available child term results

Ontology identifier Description Number of clusters
GO:0006148 inosine catabolic process 18
GO:0006154 adenosine catabolic process 38
GO:0006169 adenosine salvage 10
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0008618 7-methylguanosine metabolic process 12
GO:0009972 cytidine deamination 8
GO:0046104 thymidine metabolic process 4
GO:0046109 uridine biosynthetic process 2
GO:0080179 1-methylguanosine metabolic process 2
GO:0080180 2-methylguanosine metabolic process 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001