Functional clusters

Information

  • Type Gene Ontology
  • Description L-arabinose metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_26769_HRSCAF_26899 3 CH_ama_108 2 2 0.000517331
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 3 CH_arhy_420 4 59 0.0000180266
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 3 CH_arhy_438 4 64 0.000025152
Capsicum annuum PGAv.1.6.scaffold575 3 CH_can_460 2 2 0.000826105
Citrus clementina scaffold_2 3 CH_ccl_134 4 10 0.0000000121628
Carya illinoinensis Chr09 3 CH_cil_42 6 6 5.76544e-19
Chenopodium quinoa C_Quinoa_Scaffold_2689 3 CH_cqu_522 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3422 3 CH_cqu_523 2 2 0.000710732
Chlamydomonas reinhardtii chromosome_3 3 CH_cre_58 2 2 0.000113733
Daucus carota DCARv2_Chr9 3 CH_dca_406 2 2 0.000956663
Erythranthe guttata scaffold_4 3 CH_egut_369 2 2 0.000436888
Lupinus albus Lalb_Chr22 3 CH_lal_141 3 4 0.000000925389
Lotus japonicus chr1 3 CH_lja_42 4 4 0.0000000000164558
Magnolia biondii Chr01 3 CH_mbi_575 2 3 0.000437077
Manihot esculenta Chromosome06 3 CH_mes_332 2 2 0.000183189
Medicago truncatula chr7 3 CH_mtr_73 7 44 0.000000000000010546
Oryza sativa ssp. japonica chr12 3 CH_osa_230 3 7 0.00000819616
Prunus persica Pp07 3 CH_ppe_200 3 4 0.000000133547
Pisum sativum chr3LG5 3 CH_psa_353 2 2 0.000521635
Pisum sativum chr2LG1 3 CH_psa_354 2 2 0.000521635
Phaseolus vulgaris Chr01 3 CH_pvu_76 4 5 0.000000000416436
Salix brachista GWHAAZH00000001 3 CH_sbr_174 3 5 0.00000333454
Sequoiadendron giganteum chr9 3 CH_sgi_626 3 4 0.000000142385
Selenicereus undatus Scaffold_10417 3 CH_sun_229 2 2 0.000726639
Trifolium pratense Tp57577_TGAC_v2_LG7 3 CH_tpr_134 3 4 0.00000412485
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_292 2 2 0.000278772
Avicennia marina ScioBoG_26769_HRSCAF_26899 4 CH_ama_108 2 2 0.000517331
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 4 CH_arhy_420 4 59 0.0000180266
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 4 CH_arhy_438 4 64 0.000025152
Capsicum annuum PGAv.1.6.scaffold575 4 CH_can_460 2 2 0.000826105
Citrus clementina scaffold_2 4 CH_ccl_134 4 10 0.0000000121628
Carya illinoinensis Chr09 4 CH_cil_42 6 6 5.76544e-19
Chenopodium quinoa C_Quinoa_Scaffold_2689 4 CH_cqu_522 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3422 4 CH_cqu_523 2 2 0.000710732
Chlamydomonas reinhardtii chromosome_3 4 CH_cre_58 2 2 0.000113733
Daucus carota DCARv2_Chr9 4 CH_dca_406 2 2 0.000956663
Erythranthe guttata scaffold_4 4 CH_egut_369 2 2 0.000436888
Lupinus albus Lalb_Chr22 4 CH_lal_141 3 4 0.000000925389
Lotus japonicus chr1 4 CH_lja_42 4 4 0.0000000000164558
Magnolia biondii Chr01 4 CH_mbi_575 2 3 0.000437077
Manihot esculenta Chromosome06 4 CH_mes_332 2 2 0.000183189
Medicago truncatula chr7 4 CH_mtr_73 7 44 0.000000000000010546
Oryza sativa ssp. japonica chr12 4 CH_osa_230 3 7 0.00000819616
Prunus persica Pp07 4 CH_ppe_200 3 4 0.000000133547
Pisum sativum chr3LG5 4 CH_psa_353 2 2 0.000521635
Pisum sativum chr2LG1 4 CH_psa_354 2 2 0.000521635
Phaseolus vulgaris Chr01 4 CH_pvu_76 4 5 0.000000000416436
Salix brachista GWHAAZH00000001 4 CH_sbr_174 3 5 0.00000333454
Sequoiadendron giganteum chr9 4 CH_sgi_626 3 4 0.000000142385
Selenicereus undatus Scaffold_10417 4 CH_sun_229 2 2 0.000726639
Trifolium pratense Tp57577_TGAC_v2_LG7 4 CH_tpr_134 3 4 0.00000412485
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_292 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001