Functional clusters

Information

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica carinata	ChrC06	3	CH_bca_515	4	4	0.0000447338
Rosa chinensis	RcHm_v2.0_Chr7	3	CH_rch_610	5	16	0.000136895
Solanum lycopersicum	SL4.0ch10	3	CH_sly_312	6	15	0.0000343737
Solanum tuberosum	ST4.03ch10	3	CH_stu_310	6	15	0.00000923429
Brassica carinata	ChrC06	4	CH_bca_515	4	4	0.0000447338
Rosa chinensis	RcHm_v2.0_Chr7	4	CH_rch_610	5	16	0.000136895
Solanum lycopersicum	SL4.0ch10	4	CH_sly_312	6	15	0.0000343737
Solanum tuberosum	ST4.03ch10	4	CH_stu_310	6	15	0.00000923429

Ontology identifier	Description	Number of clusters
GO:0000122	negative regulation of transcription by RNA polymerase II	14
GO:0000183	rDNA heterochromatin assembly	16
GO:0006342	chromatin silencing	16
GO:0006346	DNA methylation-dependent heterochromatin assembly	6
GO:0006348	chromatin silencing at telomere	6
GO:0010964	regulation of heterochromatin assembly by small RNA	4
GO:0031508	pericentric heterochromatin assembly	18
GO:0031935	regulation of chromatin silencing	8
GO:0031937	positive regulation of chromatin silencing	14
GO:0045014	carbon catabolite repression of transcription by glucose	2
GO:0060195	negative regulation of antisense RNA transcription	2
GO:0060567	negative regulation of DNA-templated transcription, termination	2
GO:0070829	heterochromatin maintenance	4
GO:0070919	production of siRNA involved in chromatin silencing by small RNA	8
GO:0090309	positive regulation of DNA methylation-dependent heterochromatin assembly	2
GO:2000143	negative regulation of DNA-templated transcription, initiation	48

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value
1	MapMan	No filter applied.	2	30	80	0.001
2	MapMan	No filter applied.	2	30	80	0.001
3	GO	All GO data.	2	30	80	0.001
4	GO	All GO data.	2	30	80	0.001
5	InterPro	No filter applied.	2	30	80	0.001
6	InterPro	No filter applied.	2	30	80	0.001