Functional clusters

Information

  • Type Gene Ontology
  • Description RNA biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Scaffold_0005 3 CH_bvu_222 9 28 0.000297772
Beta vulgaris Scaffold_0005 4 CH_bvu_222 9 28 0.000297772

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0001172 transcription, RNA-templated 12
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0006269 DNA replication, synthesis of RNA primer 14
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006351 transcription, DNA-templated 10
GO:0006352 DNA-templated transcription, initiation 14
GO:0006353 DNA-templated transcription, termination 36
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006360 transcription by RNA polymerase I 14
GO:0006367 transcription initiation from RNA polymerase II promoter 6
GO:0006368 transcription elongation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 42
GO:0006383 transcription by RNA polymerase III 10
GO:0006384 transcription initiation from RNA polymerase III promoter 2
GO:0006393 termination of mitochondrial transcription 2
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0009299 mRNA transcription 4
GO:0009303 rRNA transcription 2
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0042793 plastid transcription 2
GO:0042794 plastid rRNA transcription 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0070829 heterochromatin maintenance 4
GO:0070897 transcription preinitiation complex assembly 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0097659 nucleic acid-templated transcription 10
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2001141 regulation of RNA biosynthetic process 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001