Functional clusters
Information
- Type Gene Ontology
- Description dephosphorylation of RNA polymerase II C-terminal domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 3 | CH_aag_168 | 3 | 17 | 0.000550197 |
| Acer truncatum | chr1 | 3 | CH_acertr_325 | 3 | 5 | 0.0000721728 |
| Acer truncatum | chr9 | 3 | CH_acertr_348 | 3 | 6 | 0.000144279 |
| Actinidia chinensis | Lachesis_group0 | 3 | CH_ach_63 | 3 | 3 | 0.000000730343 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 3 | CH_amhyb_67 | 3 | 3 | 0.0000023383 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 3 | CH_amhyb_68 | 3 | 3 | 0.0000023383 |
| Brassica carinata | ChrB04 | 3 | CH_bca_644 | 3 | 8 | 0.000140103 |
| Brassica napus | C09 | 3 | CH_bna_111 | 4 | 4 | 0.00000000078509 |
| Capsicum annuum | PGAv.1.6.scaffold4 | 3 | CH_can_454 | 2 | 2 | 0.000826105 |
| Carica papaya | supercontig_163 | 3 | CH_cpa_76 | 3 | 3 | 0.000000474494 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 3 | CH_cqu_327 | 3 | 4 | 0.0000441094 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_161 | 3 | 3 | 0.00000364869 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_500 | 3 | 3 | 0.000000616601 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_625 | 3 | 7 | 0.0000215653 |
| Lotus japonicus | chr4 | 3 | CH_lja_205 | 3 | 9 | 0.0000540579 |
| Medicago truncatula | chr2 | 3 | CH_mtr_181 | 5 | 19 | 0.000000000496376 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_5 | 11 | 11 | 2.54291e-34 |
| Papaver somniferum | NW_020620714.1 | 3 | CH_pso_88 | 5 | 5 | 0.000000000000458618 |
| Quercus lobata | 10 | 3 | CH_qlo_72 | 7 | 7 | 1.70687e-20 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_52 | 10 | 35 | 1.32723e-18 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_780 | 4 | 31 | 0.000957965 |
| Solanum pennellii | Spenn-ch07 | 3 | CH_spe_472 | 2 | 2 | 0.00093406 |
| Trochodendron aralioides | group3 | 3 | CH_tar_162 | 3 | 3 | 0.000000892115 |
| Utricularia gibba | unitig_21 | 3 | CH_ugi_138 | 2 | 2 | 0.000820479 |
| Vanilla planifolia | CM028152.1 | 3 | CH_vpl_74 | 4 | 12 | 0.0000000753745 |
| Anthoceros agrestis | Sc2ySwM_362 | 4 | CH_aag_168 | 3 | 17 | 0.000550197 |
| Acer truncatum | chr1 | 4 | CH_acertr_325 | 3 | 5 | 0.0000721728 |
| Acer truncatum | chr9 | 4 | CH_acertr_348 | 3 | 6 | 0.000144279 |
| Actinidia chinensis | Lachesis_group0 | 4 | CH_ach_63 | 3 | 3 | 0.000000730343 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 4 | CH_amhyb_67 | 3 | 3 | 0.0000023383 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 4 | CH_amhyb_68 | 3 | 3 | 0.0000023383 |
| Brassica carinata | ChrB04 | 4 | CH_bca_644 | 3 | 8 | 0.000140103 |
| Brassica napus | C09 | 4 | CH_bna_111 | 4 | 4 | 0.00000000078509 |
| Capsicum annuum | PGAv.1.6.scaffold4 | 4 | CH_can_454 | 2 | 2 | 0.000826105 |
| Carica papaya | supercontig_163 | 4 | CH_cpa_76 | 3 | 3 | 0.000000474494 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 4 | CH_cqu_327 | 3 | 4 | 0.0000441094 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_161 | 3 | 3 | 0.00000364869 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_500 | 3 | 3 | 0.000000616601 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_625 | 3 | 7 | 0.0000215653 |
| Lotus japonicus | chr4 | 4 | CH_lja_205 | 3 | 9 | 0.0000540579 |
| Medicago truncatula | chr2 | 4 | CH_mtr_181 | 5 | 19 | 0.000000000496376 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_5 | 11 | 11 | 2.54291e-34 |
| Papaver somniferum | NW_020620714.1 | 4 | CH_pso_88 | 5 | 5 | 0.000000000000458618 |
| Quercus lobata | 10 | 4 | CH_qlo_72 | 7 | 7 | 1.70687e-20 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_52 | 10 | 35 | 1.32723e-18 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_780 | 4 | 31 | 0.000957965 |
| Solanum pennellii | Spenn-ch07 | 4 | CH_spe_472 | 2 | 2 | 0.00093406 |
| Trochodendron aralioides | group3 | 4 | CH_tar_162 | 3 | 3 | 0.000000892115 |
| Utricularia gibba | unitig_21 | 4 | CH_ugi_138 | 2 | 2 | 0.000820479 |
| Vanilla planifolia | CM028152.1 | 4 | CH_vpl_74 | 4 | 12 | 0.0000000753745 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |