Functional clusters

Information

  • Type Gene Ontology
  • Description protein ubiquitination

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 3 CH_aag_48 7 19 0.0000000759831
Acer truncatum chr7 3 CH_acertr_208 5 6 0.00000394227
Arabidopsis lyrata scaffold_5 3 CH_aly_18 11 13 0.00000000000000381725
Arabidopsis lyrata scaffold_8 3 CH_aly_314 5 8 0.000610641
Arabidopsis lyrata scaffold_6 3 CH_aly_341 4 4 0.000870669
Arabidopsis lyrata scaffold_1 3 CH_aly_342 4 4 0.000870669
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 3 CH_arhy_44 14 21 1.53734e-21
Brassica carinata ChrB01 3 CH_bca_802 4 4 0.000414919
Brassica rapa A09 3 CH_bra_160 9 31 0.0000348115
Beta vulgaris Chr6_EL10_PGA_scaffold0 3 CH_bvu_118 5 6 0.00000263693
Camellia sinensis var. sinensis Chr5 3 CH_camsi_123 8 12 0.0000000000600381
Capsicum annuum PGAv.1.6.scaffold170 3 CH_can_221 5 7 0.00000415414
Capsicum annuum PGAv.1.6.scaffold941 3 CH_can_347 4 5 0.000165979
Citrus clementina scaffold_1 3 CH_ccl_240 5 6 0.00000656518
Citrus clementina scaffold_3 3 CH_ccl_78 8 9 0.00000000000576997
Cardamine hirsuta Chr5 3 CH_chi_41 11 17 0.000000000000185886
Carya illinoinensis Chr15 3 CH_cil_161 7 10 0.0000000093049
Corchorus olitorius AWUE01014940.1 3 CH_col_67 4 4 0.000270198
Capsella rubella scaffold_8 3 CH_cru_344 4 4 0.000920725
Capsella rubella scaffold_5 3 CH_cru_68 9 14 0.000000000744907
Eucalyptus grandis Chr01 3 CH_egr_312 7 8 0.000000000350052
Eucalyptus grandis Chr04 3 CH_egr_729 4 4 0.000108483
Erythranthe guttata scaffold_4 3 CH_egut_238 5 7 0.0000249859
Erythranthe guttata scaffold_6 3 CH_egut_81 10 22 0.000000000028129
Eutrema salsugineum scaffold_13 3 CH_esa_227 4 4 0.000420905
Fragaria vesca Fvb3 3 CH_fve_138 6 9 0.000000173599
Fragaria vesca Fvb1 3 CH_fve_56 8 12 0.000000000038737
Lactuca sativa Lsat_1_v8_lg_4 3 CH_lsa_211 5 5 0.000000443395
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_439 4 5 0.000343241
Malus domestica Chr02 3 CH_mdo_74 9 14 0.00000000000255947
Medicago truncatula chr2 3 CH_mtr_137 8 12 0.0000000000214873
Medicago truncatula chr3 3 CH_mtr_189 7 10 0.000000000954389
Medicago truncatula chr8 3 CH_mtr_208 7 11 0.00000000261192
Medicago truncatula chr1 3 CH_mtr_316 5 5 0.000000265178
Medicago truncatula chr4 3 CH_mtr_605 4 5 0.000237963
Medicago truncatula chr1 3 CH_mtr_723 4 6 0.000710707
Nelumbo nucifera chr8 3 CH_nnu_174 4 4 0.0000374225
Oryza sativa ssp. japonica chr08 3 CH_osa_143 7 8 0.000000110083
Oryza sativa ssp. japonica chr08 3 CH_osa_198 8 16 0.00000265431
Oryza sativa ssp. japonica chr09 3 CH_osa_364 6 10 0.000166115
Oryza sativa ssp. japonica chr10 3 CH_osa_4 29 60 4.99543e-31
Petunia axillaris Peaxi162Scf00273 3 CH_pax_179 4 4 0.0000422471
Prunus persica Pp07 3 CH_ppe_287 5 8 0.0000307871
Prunus persica Pp08 3 CH_ppe_413 5 12 0.000425004
Pisum sativum chr7LG7 3 CH_psa_364 5 14 0.000546077
Pisum sativum chr7LG7 3 CH_psa_43 11 39 0.0000000000157593
Papaver somniferum NC_039365.1 3 CH_pso_107 8 10 0.00000000000410333
Papaver somniferum NW_020625264.1 3 CH_pso_124 10 30 0.0000000000781914
Papaver somniferum NC_039360.1 3 CH_pso_355 7 24 0.00000522518
Papaver somniferum NC_039368.1 3 CH_pso_420 5 8 0.0000286274
Quercus lobata 9 3 CH_qlo_678 7 20 0.0000312072
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_329 5 6 0.000000647933
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_88 9 12 0.000000000000010142
Rhododendron simsii chr05 3 CH_rsi_181 7 12 0.0000000396405
Rhododendron simsii chr05 3 CH_rsi_183 6 7 0.0000000470624
Salvia bowleyana GWHASIU00000002 3 CH_sbo_216 8 50 0.000000791218
Simmondsia chinensis GWHAASQ00000016 3 CH_sci_62 6 8 0.000000190467
Sequoiadendron giganteum chr4 3 CH_sgi_577 6 9 0.0000000673134
Solanum lycopersicum SL4.0ch11 3 CH_sly_324 5 5 0.0000458247
Solanum pennellii Spenn-ch11 3 CH_spe_138 5 5 0.000000154062
Solanum pennellii Spenn-ch01 3 CH_spe_139 5 5 0.000000154062
Solanum tuberosum ST4.03ch11 3 CH_stu_245 6 6 0.000000799095
Solanum tuberosum ST4.03ch01 3 CH_stu_285 7 11 0.00000409392
Trochodendron aralioides group1 3 CH_tar_369 4 4 0.000241862
Trifolium pratense Tp57577_TGAC_v2_LG3 3 CH_tpr_67 6 6 0.0000000170084
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_196 5 8 0.0000632233
Vigna mungo CM024070.1 3 CH_vmu_190 4 4 0.0000674763
Vanilla planifolia CM028151.1 3 CH_vpl_106 6 10 0.00000133275
Anthoceros agrestis Sc2ySwM_368 4 CH_aag_48 7 19 0.0000000759831
Acer truncatum chr7 4 CH_acertr_208 5 6 0.00000394227
Arabidopsis lyrata scaffold_5 4 CH_aly_18 11 13 0.00000000000000381725
Arabidopsis lyrata scaffold_8 4 CH_aly_314 5 8 0.000610641
Arabidopsis lyrata scaffold_6 4 CH_aly_341 4 4 0.000870669
Arabidopsis lyrata scaffold_1 4 CH_aly_342 4 4 0.000870669
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 4 CH_arhy_44 14 21 1.53734e-21
Brassica carinata ChrB01 4 CH_bca_802 4 4 0.000414919
Brassica rapa A09 4 CH_bra_160 9 31 0.0000348115
Beta vulgaris Chr6_EL10_PGA_scaffold0 4 CH_bvu_118 5 6 0.00000263693
Camellia sinensis var. sinensis Chr5 4 CH_camsi_123 8 12 0.0000000000600381
Capsicum annuum PGAv.1.6.scaffold170 4 CH_can_221 5 7 0.00000415414
Capsicum annuum PGAv.1.6.scaffold941 4 CH_can_347 4 5 0.000165979
Citrus clementina scaffold_1 4 CH_ccl_240 5 6 0.00000656518
Citrus clementina scaffold_3 4 CH_ccl_78 8 9 0.00000000000576997
Cardamine hirsuta Chr5 4 CH_chi_41 11 17 0.000000000000185886
Carya illinoinensis Chr15 4 CH_cil_161 7 10 0.0000000093049
Corchorus olitorius AWUE01014940.1 4 CH_col_67 4 4 0.000270198
Capsella rubella scaffold_8 4 CH_cru_344 4 4 0.000920725
Capsella rubella scaffold_5 4 CH_cru_68 9 14 0.000000000744907
Eucalyptus grandis Chr01 4 CH_egr_312 7 8 0.000000000350052
Eucalyptus grandis Chr04 4 CH_egr_729 4 4 0.000108483
Erythranthe guttata scaffold_4 4 CH_egut_238 5 7 0.0000249859
Erythranthe guttata scaffold_6 4 CH_egut_81 10 22 0.000000000028129
Eutrema salsugineum scaffold_13 4 CH_esa_227 4 4 0.000420905
Fragaria vesca Fvb3 4 CH_fve_138 6 9 0.000000173599
Fragaria vesca Fvb1 4 CH_fve_56 8 12 0.000000000038737
Lactuca sativa Lsat_1_v8_lg_4 4 CH_lsa_211 5 5 0.000000443395
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_439 4 5 0.000343241
Malus domestica Chr02 4 CH_mdo_74 9 14 0.00000000000255947
Medicago truncatula chr2 4 CH_mtr_137 8 12 0.0000000000214873
Medicago truncatula chr3 4 CH_mtr_189 7 10 0.000000000954389
Medicago truncatula chr8 4 CH_mtr_208 7 11 0.00000000261192
Medicago truncatula chr1 4 CH_mtr_316 5 5 0.000000265178
Medicago truncatula chr4 4 CH_mtr_605 4 5 0.000237963
Medicago truncatula chr1 4 CH_mtr_723 4 6 0.000710707
Nelumbo nucifera chr8 4 CH_nnu_174 4 4 0.0000374225
Oryza sativa ssp. japonica chr08 4 CH_osa_143 7 8 0.000000110083
Oryza sativa ssp. japonica chr08 4 CH_osa_198 8 16 0.00000265431
Oryza sativa ssp. japonica chr09 4 CH_osa_364 6 10 0.000166115
Oryza sativa ssp. japonica chr10 4 CH_osa_4 29 60 4.99543e-31
Petunia axillaris Peaxi162Scf00273 4 CH_pax_179 4 4 0.0000422471
Prunus persica Pp07 4 CH_ppe_287 5 8 0.0000307871
Prunus persica Pp08 4 CH_ppe_413 5 12 0.000425004
Pisum sativum chr7LG7 4 CH_psa_364 5 14 0.000546077
Pisum sativum chr7LG7 4 CH_psa_43 11 39 0.0000000000157593
Papaver somniferum NC_039365.1 4 CH_pso_107 8 10 0.00000000000410333
Papaver somniferum NW_020625264.1 4 CH_pso_124 10 30 0.0000000000781914
Papaver somniferum NC_039360.1 4 CH_pso_355 7 24 0.00000522518
Papaver somniferum NC_039368.1 4 CH_pso_420 5 8 0.0000286274
Quercus lobata 9 4 CH_qlo_678 7 20 0.0000312072
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_329 5 6 0.000000647933
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_88 9 12 0.000000000000010142
Rhododendron simsii chr05 4 CH_rsi_181 7 12 0.0000000396405
Rhododendron simsii chr05 4 CH_rsi_183 6 7 0.0000000470624
Salvia bowleyana GWHASIU00000002 4 CH_sbo_216 8 50 0.000000791218
Simmondsia chinensis GWHAASQ00000016 4 CH_sci_62 6 8 0.000000190467
Sequoiadendron giganteum chr4 4 CH_sgi_577 6 9 0.0000000673134
Solanum lycopersicum SL4.0ch11 4 CH_sly_324 5 5 0.0000458247
Solanum pennellii Spenn-ch11 4 CH_spe_138 5 5 0.000000154062
Solanum pennellii Spenn-ch01 4 CH_spe_139 5 5 0.000000154062
Solanum tuberosum ST4.03ch11 4 CH_stu_245 6 6 0.000000799095
Solanum tuberosum ST4.03ch01 4 CH_stu_285 7 11 0.00000409392
Trochodendron aralioides group1 4 CH_tar_369 4 4 0.000241862
Trifolium pratense Tp57577_TGAC_v2_LG3 4 CH_tpr_67 6 6 0.0000000170084
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_196 5 8 0.0000632233
Vigna mungo CM024070.1 4 CH_vmu_190 4 4 0.0000674763
Vanilla planifolia CM028151.1 4 CH_vpl_106 6 10 0.00000133275

Available child term results

Ontology identifier Description Number of clusters
GO:0000209 protein polyubiquitination 74
GO:0010390 histone monoubiquitination 20
GO:0031396 regulation of protein ubiquitination 2
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033523 histone H2B ubiquitination 2
GO:0070534 protein K63-linked ubiquitination 10
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1904667 negative regulation of ubiquitin protein ligase activity 8
GO:1904668 positive regulation of ubiquitin protein ligase activity 28

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001