Functional clusters
Information
- Type Gene Ontology
- Description protein ubiquitination
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 3 | CH_aag_48 | 7 | 19 | 0.0000000759831 |
| Acer truncatum | chr7 | 3 | CH_acertr_208 | 5 | 6 | 0.00000394227 |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_18 | 11 | 13 | 0.00000000000000381725 |
| Arabidopsis lyrata | scaffold_8 | 3 | CH_aly_314 | 5 | 8 | 0.000610641 |
| Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_341 | 4 | 4 | 0.000870669 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_342 | 4 | 4 | 0.000870669 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 3 | CH_arhy_44 | 14 | 21 | 1.53734e-21 |
| Brassica carinata | ChrB01 | 3 | CH_bca_802 | 4 | 4 | 0.000414919 |
| Brassica rapa | A09 | 3 | CH_bra_160 | 9 | 31 | 0.0000348115 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 3 | CH_bvu_118 | 5 | 6 | 0.00000263693 |
| Camellia sinensis var. sinensis | Chr5 | 3 | CH_camsi_123 | 8 | 12 | 0.0000000000600381 |
| Capsicum annuum | PGAv.1.6.scaffold170 | 3 | CH_can_221 | 5 | 7 | 0.00000415414 |
| Capsicum annuum | PGAv.1.6.scaffold941 | 3 | CH_can_347 | 4 | 5 | 0.000165979 |
| Citrus clementina | scaffold_1 | 3 | CH_ccl_240 | 5 | 6 | 0.00000656518 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_78 | 8 | 9 | 0.00000000000576997 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_41 | 11 | 17 | 0.000000000000185886 |
| Carya illinoinensis | Chr15 | 3 | CH_cil_161 | 7 | 10 | 0.0000000093049 |
| Corchorus olitorius | AWUE01014940.1 | 3 | CH_col_67 | 4 | 4 | 0.000270198 |
| Capsella rubella | scaffold_8 | 3 | CH_cru_344 | 4 | 4 | 0.000920725 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_68 | 9 | 14 | 0.000000000744907 |
| Eucalyptus grandis | Chr01 | 3 | CH_egr_312 | 7 | 8 | 0.000000000350052 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_729 | 4 | 4 | 0.000108483 |
| Erythranthe guttata | scaffold_4 | 3 | CH_egut_238 | 5 | 7 | 0.0000249859 |
| Erythranthe guttata | scaffold_6 | 3 | CH_egut_81 | 10 | 22 | 0.000000000028129 |
| Eutrema salsugineum | scaffold_13 | 3 | CH_esa_227 | 4 | 4 | 0.000420905 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_138 | 6 | 9 | 0.000000173599 |
| Fragaria vesca | Fvb1 | 3 | CH_fve_56 | 8 | 12 | 0.000000000038737 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_211 | 5 | 5 | 0.000000443395 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_439 | 4 | 5 | 0.000343241 |
| Malus domestica | Chr02 | 3 | CH_mdo_74 | 9 | 14 | 0.00000000000255947 |
| Medicago truncatula | chr2 | 3 | CH_mtr_137 | 8 | 12 | 0.0000000000214873 |
| Medicago truncatula | chr3 | 3 | CH_mtr_189 | 7 | 10 | 0.000000000954389 |
| Medicago truncatula | chr8 | 3 | CH_mtr_208 | 7 | 11 | 0.00000000261192 |
| Medicago truncatula | chr1 | 3 | CH_mtr_316 | 5 | 5 | 0.000000265178 |
| Medicago truncatula | chr4 | 3 | CH_mtr_605 | 4 | 5 | 0.000237963 |
| Medicago truncatula | chr1 | 3 | CH_mtr_723 | 4 | 6 | 0.000710707 |
| Nelumbo nucifera | chr8 | 3 | CH_nnu_174 | 4 | 4 | 0.0000374225 |
| Oryza sativa ssp. japonica | chr08 | 3 | CH_osa_143 | 7 | 8 | 0.000000110083 |
| Oryza sativa ssp. japonica | chr08 | 3 | CH_osa_198 | 8 | 16 | 0.00000265431 |
| Oryza sativa ssp. japonica | chr09 | 3 | CH_osa_364 | 6 | 10 | 0.000166115 |
| Oryza sativa ssp. japonica | chr10 | 3 | CH_osa_4 | 29 | 60 | 4.99543e-31 |
| Petunia axillaris | Peaxi162Scf00273 | 3 | CH_pax_179 | 4 | 4 | 0.0000422471 |
| Prunus persica | Pp07 | 3 | CH_ppe_287 | 5 | 8 | 0.0000307871 |
| Prunus persica | Pp08 | 3 | CH_ppe_413 | 5 | 12 | 0.000425004 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_364 | 5 | 14 | 0.000546077 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_43 | 11 | 39 | 0.0000000000157593 |
| Papaver somniferum | NC_039365.1 | 3 | CH_pso_107 | 8 | 10 | 0.00000000000410333 |
| Papaver somniferum | NW_020625264.1 | 3 | CH_pso_124 | 10 | 30 | 0.0000000000781914 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_355 | 7 | 24 | 0.00000522518 |
| Papaver somniferum | NC_039368.1 | 3 | CH_pso_420 | 5 | 8 | 0.0000286274 |
| Quercus lobata | 9 | 3 | CH_qlo_678 | 7 | 20 | 0.0000312072 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_329 | 5 | 6 | 0.000000647933 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_88 | 9 | 12 | 0.000000000000010142 |
| Rhododendron simsii | chr05 | 3 | CH_rsi_181 | 7 | 12 | 0.0000000396405 |
| Rhododendron simsii | chr05 | 3 | CH_rsi_183 | 6 | 7 | 0.0000000470624 |
| Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_216 | 8 | 50 | 0.000000791218 |
| Simmondsia chinensis | GWHAASQ00000016 | 3 | CH_sci_62 | 6 | 8 | 0.000000190467 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_577 | 6 | 9 | 0.0000000673134 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_324 | 5 | 5 | 0.0000458247 |
| Solanum pennellii | Spenn-ch11 | 3 | CH_spe_138 | 5 | 5 | 0.000000154062 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_139 | 5 | 5 | 0.000000154062 |
| Solanum tuberosum | ST4.03ch11 | 3 | CH_stu_245 | 6 | 6 | 0.000000799095 |
| Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_285 | 7 | 11 | 0.00000409392 |
| Trochodendron aralioides | group1 | 3 | CH_tar_369 | 4 | 4 | 0.000241862 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_67 | 6 | 6 | 0.0000000170084 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_196 | 5 | 8 | 0.0000632233 |
| Vigna mungo | CM024070.1 | 3 | CH_vmu_190 | 4 | 4 | 0.0000674763 |
| Vanilla planifolia | CM028151.1 | 3 | CH_vpl_106 | 6 | 10 | 0.00000133275 |
| Anthoceros agrestis | Sc2ySwM_368 | 4 | CH_aag_48 | 7 | 19 | 0.0000000759831 |
| Acer truncatum | chr7 | 4 | CH_acertr_208 | 5 | 6 | 0.00000394227 |
| Arabidopsis lyrata | scaffold_5 | 4 | CH_aly_18 | 11 | 13 | 0.00000000000000381725 |
| Arabidopsis lyrata | scaffold_8 | 4 | CH_aly_314 | 5 | 8 | 0.000610641 |
| Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_341 | 4 | 4 | 0.000870669 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_342 | 4 | 4 | 0.000870669 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 4 | CH_arhy_44 | 14 | 21 | 1.53734e-21 |
| Brassica carinata | ChrB01 | 4 | CH_bca_802 | 4 | 4 | 0.000414919 |
| Brassica rapa | A09 | 4 | CH_bra_160 | 9 | 31 | 0.0000348115 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 4 | CH_bvu_118 | 5 | 6 | 0.00000263693 |
| Camellia sinensis var. sinensis | Chr5 | 4 | CH_camsi_123 | 8 | 12 | 0.0000000000600381 |
| Capsicum annuum | PGAv.1.6.scaffold170 | 4 | CH_can_221 | 5 | 7 | 0.00000415414 |
| Capsicum annuum | PGAv.1.6.scaffold941 | 4 | CH_can_347 | 4 | 5 | 0.000165979 |
| Citrus clementina | scaffold_1 | 4 | CH_ccl_240 | 5 | 6 | 0.00000656518 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_78 | 8 | 9 | 0.00000000000576997 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_41 | 11 | 17 | 0.000000000000185886 |
| Carya illinoinensis | Chr15 | 4 | CH_cil_161 | 7 | 10 | 0.0000000093049 |
| Corchorus olitorius | AWUE01014940.1 | 4 | CH_col_67 | 4 | 4 | 0.000270198 |
| Capsella rubella | scaffold_8 | 4 | CH_cru_344 | 4 | 4 | 0.000920725 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_68 | 9 | 14 | 0.000000000744907 |
| Eucalyptus grandis | Chr01 | 4 | CH_egr_312 | 7 | 8 | 0.000000000350052 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_729 | 4 | 4 | 0.000108483 |
| Erythranthe guttata | scaffold_4 | 4 | CH_egut_238 | 5 | 7 | 0.0000249859 |
| Erythranthe guttata | scaffold_6 | 4 | CH_egut_81 | 10 | 22 | 0.000000000028129 |
| Eutrema salsugineum | scaffold_13 | 4 | CH_esa_227 | 4 | 4 | 0.000420905 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_138 | 6 | 9 | 0.000000173599 |
| Fragaria vesca | Fvb1 | 4 | CH_fve_56 | 8 | 12 | 0.000000000038737 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_211 | 5 | 5 | 0.000000443395 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_439 | 4 | 5 | 0.000343241 |
| Malus domestica | Chr02 | 4 | CH_mdo_74 | 9 | 14 | 0.00000000000255947 |
| Medicago truncatula | chr2 | 4 | CH_mtr_137 | 8 | 12 | 0.0000000000214873 |
| Medicago truncatula | chr3 | 4 | CH_mtr_189 | 7 | 10 | 0.000000000954389 |
| Medicago truncatula | chr8 | 4 | CH_mtr_208 | 7 | 11 | 0.00000000261192 |
| Medicago truncatula | chr1 | 4 | CH_mtr_316 | 5 | 5 | 0.000000265178 |
| Medicago truncatula | chr4 | 4 | CH_mtr_605 | 4 | 5 | 0.000237963 |
| Medicago truncatula | chr1 | 4 | CH_mtr_723 | 4 | 6 | 0.000710707 |
| Nelumbo nucifera | chr8 | 4 | CH_nnu_174 | 4 | 4 | 0.0000374225 |
| Oryza sativa ssp. japonica | chr08 | 4 | CH_osa_143 | 7 | 8 | 0.000000110083 |
| Oryza sativa ssp. japonica | chr08 | 4 | CH_osa_198 | 8 | 16 | 0.00000265431 |
| Oryza sativa ssp. japonica | chr09 | 4 | CH_osa_364 | 6 | 10 | 0.000166115 |
| Oryza sativa ssp. japonica | chr10 | 4 | CH_osa_4 | 29 | 60 | 4.99543e-31 |
| Petunia axillaris | Peaxi162Scf00273 | 4 | CH_pax_179 | 4 | 4 | 0.0000422471 |
| Prunus persica | Pp07 | 4 | CH_ppe_287 | 5 | 8 | 0.0000307871 |
| Prunus persica | Pp08 | 4 | CH_ppe_413 | 5 | 12 | 0.000425004 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_364 | 5 | 14 | 0.000546077 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_43 | 11 | 39 | 0.0000000000157593 |
| Papaver somniferum | NC_039365.1 | 4 | CH_pso_107 | 8 | 10 | 0.00000000000410333 |
| Papaver somniferum | NW_020625264.1 | 4 | CH_pso_124 | 10 | 30 | 0.0000000000781914 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_355 | 7 | 24 | 0.00000522518 |
| Papaver somniferum | NC_039368.1 | 4 | CH_pso_420 | 5 | 8 | 0.0000286274 |
| Quercus lobata | 9 | 4 | CH_qlo_678 | 7 | 20 | 0.0000312072 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_329 | 5 | 6 | 0.000000647933 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_88 | 9 | 12 | 0.000000000000010142 |
| Rhododendron simsii | chr05 | 4 | CH_rsi_181 | 7 | 12 | 0.0000000396405 |
| Rhododendron simsii | chr05 | 4 | CH_rsi_183 | 6 | 7 | 0.0000000470624 |
| Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_216 | 8 | 50 | 0.000000791218 |
| Simmondsia chinensis | GWHAASQ00000016 | 4 | CH_sci_62 | 6 | 8 | 0.000000190467 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_577 | 6 | 9 | 0.0000000673134 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_324 | 5 | 5 | 0.0000458247 |
| Solanum pennellii | Spenn-ch11 | 4 | CH_spe_138 | 5 | 5 | 0.000000154062 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_139 | 5 | 5 | 0.000000154062 |
| Solanum tuberosum | ST4.03ch11 | 4 | CH_stu_245 | 6 | 6 | 0.000000799095 |
| Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_285 | 7 | 11 | 0.00000409392 |
| Trochodendron aralioides | group1 | 4 | CH_tar_369 | 4 | 4 | 0.000241862 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_67 | 6 | 6 | 0.0000000170084 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_196 | 5 | 8 | 0.0000632233 |
| Vigna mungo | CM024070.1 | 4 | CH_vmu_190 | 4 | 4 | 0.0000674763 |
| Vanilla planifolia | CM028151.1 | 4 | CH_vpl_106 | 6 | 10 | 0.00000133275 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000209 | protein polyubiquitination | 74 |
| GO:0010390 | histone monoubiquitination | 20 |
| GO:0031396 | regulation of protein ubiquitination | 2 |
| GO:0033184 | positive regulation of histone ubiquitination | 4 |
| GO:0033523 | histone H2B ubiquitination | 2 |
| GO:0070534 | protein K63-linked ubiquitination | 10 |
| GO:1902916 | positive regulation of protein polyubiquitination | 8 |
| GO:1904667 | negative regulation of ubiquitin protein ligase activity | 8 |
| GO:1904668 | positive regulation of ubiquitin protein ligase activity | 28 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |