Functional clusters

Information

  • Type Gene Ontology
  • Description exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 3 CH_acertr_112 3 3 0.00000002982
Brassica carinata ChrC08 3 CH_bca_998 2 2 0.000961939
Brassica oleracea C9 3 CH_bol_373 2 2 0.000686409
Brassica rapa A10 3 CH_bra_281 2 2 0.00064397
Glycine max Gm05 3 CH_gma_534 3 37 0.000937414
Sequoiadendron giganteum chr6 3 CH_sgi_552 3 3 0.0000000355983
Vigna mungo CM024070.1 3 CH_vmu_79 3 3 0.0000000626267
Vanilla planifolia CM028155.1 3 CH_vpl_256 2 2 0.000221664
Acer truncatum chr6 4 CH_acertr_112 3 3 0.00000002982
Brassica carinata ChrC08 4 CH_bca_998 2 2 0.000961939
Brassica oleracea C9 4 CH_bol_373 2 2 0.000686409
Brassica rapa A10 4 CH_bra_281 2 2 0.00064397
Glycine max Gm05 4 CH_gma_534 3 37 0.000937414
Sequoiadendron giganteum chr6 4 CH_sgi_552 3 3 0.0000000355983
Vigna mungo CM024070.1 4 CH_vmu_79 3 3 0.0000000626267
Vanilla planifolia CM028155.1 4 CH_vpl_256 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001