Functional clusters
Information
- Type Gene Ontology
- Description tRNA dihydrouridine synthesis
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 3 | CH_aar_234 | 2 | 2 | 0.000547395 |
| Camellia sinensis var. sinensis | Chr7 | 3 | CH_camsi_96 | 4 | 5 | 0.00000000000723146 |
| Capsicum annuum | PGAv.1.6.scaffold219 | 3 | CH_can_289 | 2 | 2 | 0.0000826105 |
| Cicer arietinum L. | Ca_LG5_v3 | 3 | CH_car_145 | 2 | 2 | 0.00023349 |
| Carpinus fangiana | Cfa04 | 3 | CH_cfa_140 | 3 | 10 | 0.0000010322 |
| Lupinus albus | Lalb_Chr01 | 3 | CH_lal_398 | 2 | 2 | 0.000787236 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 3 | CH_rch_629 | 2 | 4 | 0.000239182 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_279 | 3 | 8 | 0.0000101226 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_71 | 4 | 13 | 0.000000000188728 |
| Utricularia gibba | unitig_749 | 3 | CH_ugi_93 | 2 | 2 | 0.000246144 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_208 | 2 | 2 | 0.0000929238 |
| Vanilla planifolia | CM028155.1 | 3 | CH_vpl_259 | 2 | 2 | 0.000221664 |
| Aethionema arabicum | LG-11 | 4 | CH_aar_234 | 2 | 2 | 0.000547395 |
| Camellia sinensis var. sinensis | Chr7 | 4 | CH_camsi_96 | 4 | 5 | 0.00000000000723146 |
| Capsicum annuum | PGAv.1.6.scaffold219 | 4 | CH_can_289 | 2 | 2 | 0.0000826105 |
| Cicer arietinum L. | Ca_LG5_v3 | 4 | CH_car_145 | 2 | 2 | 0.00023349 |
| Carpinus fangiana | Cfa04 | 4 | CH_cfa_140 | 3 | 10 | 0.0000010322 |
| Lupinus albus | Lalb_Chr01 | 4 | CH_lal_398 | 2 | 2 | 0.000787236 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 4 | CH_rch_629 | 2 | 4 | 0.000239182 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_279 | 3 | 8 | 0.0000101226 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_71 | 4 | 13 | 0.000000000188728 |
| Utricularia gibba | unitig_749 | 4 | CH_ugi_93 | 2 | 2 | 0.000246144 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_208 | 2 | 2 | 0.0000929238 |
| Vanilla planifolia | CM028155.1 | 4 | CH_vpl_259 | 2 | 2 | 0.000221664 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |