Functional clusters

Information

  • Type Gene Ontology
  • Description lipid metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 3 CH_aly_50 11 15 0.000000000320149
Arabidopsis thaliana Chr5 3 CH_ath_362 11 49 0.0000363099
Amborella trichopoda AmTr_v1.0_scaffold00126 3 CH_atr_108 8 10 0.00000030421
Brassica napus C03 3 CH_bna_639 5 5 0.000645637
Brassica oleracea C3 3 CH_bol_200 6 6 0.00000564156
Brassica rapa A03 3 CH_bra_303 5 5 0.000873751
Cannabis sativa NC_044376.1 3 CH_cansat_142 8 11 0.00000136131
Cannabis sativa NC_044373.1 3 CH_cansat_174 12 41 0.0000177741
Corylus avellana 7 3 CH_cav_277 10 26 0.0000909583
Ceratophyllum demersum 3 3 CH_cde_74 11 26 0.0000082749
Cardamine hirsuta Chr3 3 CH_chi_364 5 5 0.000675163
Carya illinoinensis Chr15 3 CH_cil_353 14 52 0.0000767151
Citrullus lanatus CG_Chr02 3 CH_cla_163 5 5 0.000728577
Cucumis melo chr11 3 CH_cme_124 12 36 0.00000276402
Chenopodium quinoa C_Quinoa_Scaffold_1257 3 CH_cqu_534 10 29 0.000712004
Capsella rubella scaffold_6 3 CH_cru_53 11 13 0.000000000045637
Cucumis sativus L. chr2 3 CH_csa_42 22 68 0.0000000000023293
Eucalyptus grandis Chr06 3 CH_egr_171 22 50 0.00000000000000167183
Fragaria vesca Fvb2 3 CH_fve_81 16 49 0.00000000114953
Gossypium hirsutum A05 3 CH_ghi_259 11 21 0.000000354516
Gossypium hirsutum D05 3 CH_ghi_390 9 17 0.000028925
Gossypium raimondii Chr09 3 CH_gra_239 9 20 0.000149156
Lonicera japonica GWHAAZE00000009 3 CH_lonja_268 10 17 0.000000713403
Lonicera japonica GWHAAZE00000007 3 CH_lonja_68 18 26 6.59208e-17
Magnolia biondii Chr02 3 CH_mbi_457 10 37 0.000137722
Medicago truncatula chr8 3 CH_mtr_744 6 10 0.000766131
Prunus persica Pp03 3 CH_ppe_146 21 80 0.00000000231543
Prunus persica Pp01 3 CH_ppe_224 7 7 0.00000106632
Populus trichocarpa Chr17 3 CH_ptr_111 11 12 0.000000000030607
Populus trichocarpa Chr19 3 CH_ptr_235 14 40 0.00000104403
Populus trichocarpa Chr14 3 CH_ptr_281 7 8 0.0000150181
Quercus lobata CM012294 3 CH_qlo_300 21 80 0.00000000141673
Quercus lobata 9 3 CH_qlo_764 8 14 0.0000876918
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_154 20 80 0.0000000000386473
Salix brachista GWHAAZH00000006 3 CH_sbr_141 8 9 0.000000286377
Sequoiadendron giganteum chr1 3 CH_sgi_1357 8 17 0.000856361
Sequoiadendron giganteum chr5 3 CH_sgi_889 8 12 0.0000201344
Sequoiadendron giganteum chr4 3 CH_sgi_929 7 9 0.0000485734
Theobroma cacao Chromosome_8 3 CH_tca_236 6 6 0.0000244086
Vigna mungo CM024078.1 3 CH_vmu_23 15 28 0.00000000000316199
Arabidopsis lyrata scaffold_6 4 CH_aly_50 11 15 0.000000000320149
Arabidopsis thaliana Chr5 4 CH_ath_362 11 49 0.0000363099
Amborella trichopoda AmTr_v1.0_scaffold00126 4 CH_atr_108 8 10 0.00000030421
Brassica napus C03 4 CH_bna_639 5 5 0.000645637
Brassica oleracea C3 4 CH_bol_200 6 6 0.00000564156
Brassica rapa A03 4 CH_bra_303 5 5 0.000873751
Cannabis sativa NC_044376.1 4 CH_cansat_142 8 11 0.00000136131
Cannabis sativa NC_044373.1 4 CH_cansat_174 12 41 0.0000177741
Corylus avellana 7 4 CH_cav_277 10 26 0.0000909583
Ceratophyllum demersum 3 4 CH_cde_74 11 26 0.0000082749
Cardamine hirsuta Chr3 4 CH_chi_364 5 5 0.000675163
Carya illinoinensis Chr15 4 CH_cil_353 14 52 0.0000767151
Citrullus lanatus CG_Chr02 4 CH_cla_163 5 5 0.000728577
Cucumis melo chr11 4 CH_cme_124 12 36 0.00000276402
Chenopodium quinoa C_Quinoa_Scaffold_1257 4 CH_cqu_534 10 29 0.000712004
Capsella rubella scaffold_6 4 CH_cru_53 11 13 0.000000000045637
Cucumis sativus L. chr2 4 CH_csa_42 22 68 0.0000000000023293
Eucalyptus grandis Chr06 4 CH_egr_171 22 50 0.00000000000000167183
Fragaria vesca Fvb2 4 CH_fve_81 16 49 0.00000000114953
Gossypium hirsutum A05 4 CH_ghi_259 11 21 0.000000354516
Gossypium hirsutum D05 4 CH_ghi_390 9 17 0.000028925
Gossypium raimondii Chr09 4 CH_gra_239 9 20 0.000149156
Lonicera japonica GWHAAZE00000009 4 CH_lonja_268 10 17 0.000000713403
Lonicera japonica GWHAAZE00000007 4 CH_lonja_68 18 26 6.59208e-17
Magnolia biondii Chr02 4 CH_mbi_457 10 37 0.000137722
Medicago truncatula chr8 4 CH_mtr_744 6 10 0.000766131
Prunus persica Pp03 4 CH_ppe_146 21 80 0.00000000231543
Prunus persica Pp01 4 CH_ppe_224 7 7 0.00000106632
Populus trichocarpa Chr17 4 CH_ptr_111 11 12 0.000000000030607
Populus trichocarpa Chr19 4 CH_ptr_235 14 40 0.00000104403
Populus trichocarpa Chr14 4 CH_ptr_281 7 8 0.0000150181
Quercus lobata CM012294 4 CH_qlo_300 21 80 0.00000000141673
Quercus lobata 9 4 CH_qlo_764 8 14 0.0000876918
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_154 20 80 0.0000000000386473
Salix brachista GWHAAZH00000006 4 CH_sbr_141 8 9 0.000000286377
Sequoiadendron giganteum chr1 4 CH_sgi_1357 8 17 0.000856361
Sequoiadendron giganteum chr5 4 CH_sgi_889 8 12 0.0000201344
Sequoiadendron giganteum chr4 4 CH_sgi_929 7 9 0.0000485734
Theobroma cacao Chromosome_8 4 CH_tca_236 6 6 0.0000244086
Vigna mungo CM024078.1 4 CH_vmu_23 15 28 0.00000000000316199

Available child term results

Ontology identifier Description Number of clusters
GO:0001561 fatty acid alpha-oxidation 42
GO:0001676 long-chain fatty acid metabolic process 2
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 4
GO:0006506 GPI anchor biosynthetic process 14
GO:0006631 fatty acid metabolic process 8
GO:0006633 fatty acid biosynthetic process 46
GO:0006635 fatty acid beta-oxidation 6
GO:0006636 unsaturated fatty acid biosynthetic process 8
GO:0006639 acylglycerol metabolic process 2
GO:0006642 triglyceride mobilization 2
GO:0006644 phospholipid metabolic process 2
GO:0006651 diacylglycerol biosynthetic process 26
GO:0006654 phosphatidic acid biosynthetic process 4
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 2
GO:0006666 3-keto-sphinganine metabolic process 2
GO:0006671 phytosphingosine metabolic process 4
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006680 glucosylceramide catabolic process 10
GO:0006694 steroid biosynthetic process 14
GO:0006721 terpenoid metabolic process 18
GO:0006722 triterpenoid metabolic process 22
GO:0008202 steroid metabolic process 4
GO:0008299 isoprenoid biosynthetic process 26
GO:0008610 lipid biosynthetic process 12
GO:0008654 phospholipid biosynthetic process 4
GO:0009686 gibberellin biosynthetic process 2
GO:0009695 jasmonic acid biosynthetic process 4
GO:0010028 xanthophyll cycle 2
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010241 ent-kaurene oxidation to kaurenoic acid 34
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010422 regulation of brassinosteroid biosynthetic process 44
GO:0010430 fatty acid omega-oxidation 4
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010597 green leaf volatile biosynthetic process 8
GO:0010683 tricyclic triterpenoid metabolic process 2
GO:0010896 regulation of triglyceride catabolic process 8
GO:0016024 CDP-diacylglycerol biosynthetic process 2
GO:0016042 lipid catabolic process 12
GO:0016093 polyprenol metabolic process 4
GO:0016094 polyprenol biosynthetic process 4
GO:0016099 monoterpenoid biosynthetic process 12
GO:0016101 diterpenoid metabolic process 32
GO:0016102 diterpenoid biosynthetic process 82
GO:0016104 triterpenoid biosynthetic process 6
GO:0016106 sesquiterpenoid biosynthetic process 6
GO:0016114 terpenoid biosynthetic process 6
GO:0016121 carotene catabolic process 4
GO:0016122 xanthophyll metabolic process 2
GO:0016123 xanthophyll biosynthetic process 2
GO:0016124 xanthophyll catabolic process 12
GO:0016126 sterol biosynthetic process 4
GO:0016127 sterol catabolic process 10
GO:0016131 brassinosteroid metabolic process 2
GO:0016255 attachment of GPI anchor to protein 14
GO:0019218 regulation of steroid metabolic process 30
GO:0019374 galactolipid metabolic process 2
GO:0019408 dolichol biosynthetic process 18
GO:0019432 triglyceride biosynthetic process 2
GO:0019433 triglyceride catabolic process 10
GO:0019605 butyrate metabolic process 2
GO:0019742 pentacyclic triterpenoid metabolic process 12
GO:0019745 pentacyclic triterpenoid biosynthetic process 6
GO:0030497 fatty acid elongation 6
GO:0031998 regulation of fatty acid beta-oxidation 2
GO:0032049 cardiolipin biosynthetic process 8
GO:0033306 phytol metabolic process 74
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 8
GO:0034434 sterol esterification 108
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 4
GO:0042214 terpene metabolic process 2
GO:0042758 long-chain fatty acid catabolic process 2
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042760 very long-chain fatty acid catabolic process 2
GO:0042761 very long-chain fatty acid biosynthetic process 2
GO:0043692 monoterpene metabolic process 2
GO:0043693 monoterpene biosynthetic process 4
GO:0044242 cellular lipid catabolic process 2
GO:0044255 cellular lipid metabolic process 4
GO:0045017 glycerolipid biosynthetic process 2
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045338 farnesyl diphosphate metabolic process 6
GO:0045339 farnesyl diphosphate catabolic process 14
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045834 positive regulation of lipid metabolic process 2
GO:0046337 phosphatidylethanolamine metabolic process 2
GO:0046340 diacylglycerol catabolic process 8
GO:0046345 abscisic acid catabolic process 16
GO:0046459 short-chain fatty acid metabolic process 2
GO:0046466 membrane lipid catabolic process 4
GO:0046470 phosphatidylcholine metabolic process 2
GO:0046473 phosphatidic acid metabolic process 4
GO:0046488 phosphatidylinositol metabolic process 2
GO:0046512 sphingosine biosynthetic process 16
GO:0046514 ceramide catabolic process 6
GO:0046520 sphingoid biosynthetic process 18
GO:0046854 phosphatidylinositol phosphate biosynthetic process 2
GO:0046856 phosphatidylinositol dephosphorylation 8
GO:0051502 diterpene phytoalexin biosynthetic process 16
GO:0051762 sesquiterpene biosynthetic process 14
GO:0051791 medium-chain fatty acid metabolic process 6
GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 4
GO:0080003 thalianol metabolic process 6
GO:0080065 4-alpha-methyl-delta7-sterol oxidation 4
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:0106118 regulation of sterol biosynthetic process 4
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901601 strigolactone biosynthetic process 10
GO:1901811 beta-carotene catabolic process 10
GO:1901937 beta-caryophyllene biosynthetic process 4
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:1903509 liposaccharide metabolic process 4
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:1905038 regulation of membrane lipid metabolic process 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001