Functional clusters

Information

  • Type Gene Ontology
  • Description nucleobase-containing small molecule metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Coffea canephora chr10 3 CH_ccan_152 4 9 0.0000071977
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_334 4 4 0.000545025
Coffea canephora chr10 4 CH_ccan_152 4 9 0.0000071977
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_334 4 4 0.000545025

Available child term results

Ontology identifier Description Number of clusters
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006096 glycolytic process 20
GO:0006104 succinyl-CoA metabolic process 6
GO:0006110 regulation of glycolytic process 2
GO:0006148 inosine catabolic process 18
GO:0006154 adenosine catabolic process 38
GO:0006167 AMP biosynthetic process 8
GO:0006169 adenosine salvage 10
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006210 thymine catabolic process 10
GO:0006223 uracil salvage 2
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006741 NADP biosynthetic process 16
GO:0006747 FAD biosynthetic process 2
GO:0008618 7-methylguanosine metabolic process 12
GO:0009116 nucleoside metabolic process 50
GO:0009127 purine nucleoside monophosphate biosynthetic process 2
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009143 nucleoside triphosphate catabolic process 14
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009166 nucleotide catabolic process 2
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 2
GO:0009190 cyclic nucleotide biosynthetic process 2
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0009972 cytidine deamination 8
GO:0015936 coenzyme A metabolic process 10
GO:0015938 coenzyme A catabolic process 2
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0015986 ATP synthesis coupled proton transport 22
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 2
GO:0019305 dTDP-rhamnose biosynthetic process 6
GO:0019365 pyridine nucleotide salvage 6
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0032264 IMP salvage 18
GO:0033320 UDP-D-xylose biosynthetic process 4
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034355 NAD salvage 2
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 8
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0046104 thymidine metabolic process 4
GO:0046109 uridine biosynthetic process 2
GO:0046110 xanthine metabolic process 8
GO:0046710 GDP metabolic process 2
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080179 1-methylguanosine metabolic process 2
GO:0080180 2-methylguanosine metabolic process 8
GO:0106046 guanine deglycation, glyoxal removal 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901293 nucleoside phosphate biosynthetic process 2
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001