Functional clusters
Information
- Type Gene Ontology
- Description xylan catabolic process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 3 | CH_atr_153 | 3 | 3 | 0.00000772476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 3 | CH_atr_188 | 3 | 5 | 0.0000771725 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 3 | CH_atr_80 | 4 | 5 | 0.000000023003 |
| Brassica carinata | ChrC08 | 3 | CH_bca_146 | 4 | 4 | 0.00000000620901 |
| Brassica carinata | ChrB08 | 3 | CH_bca_8 | 8 | 8 | 2.89807e-22 |
| Capsicum annuum | PGAv.1.6.scaffold517 | 3 | CH_can_49 | 6 | 6 | 4.33453e-16 |
| Coffea canephora | chr1 | 3 | CH_ccan_346 | 2 | 2 | 0.000447185 |
| Citrus clementina | scaffold_2 | 3 | CH_ccl_220 | 3 | 3 | 0.0000028869 |
| Carica papaya | supercontig_66 | 3 | CH_cpa_102 | 3 | 3 | 0.00000493474 |
| Carica papaya | supercontig_166 | 3 | CH_cpa_103 | 3 | 3 | 0.00000493474 |
| Eucalyptus grandis | Chr07 | 3 | CH_egr_146 | 6 | 6 | 1.91288e-16 |
| Erythranthe guttata | scaffold_3 | 3 | CH_egut_36 | 7 | 8 | 8.3373e-17 |
| Erythranthe guttata | scaffold_3 | 3 | CH_egut_60 | 6 | 7 | 0.0000000000000953978 |
| Fragaria x ananassa | Fvb5-2 | 3 | CH_fan_297 | 3 | 4 | 0.0000173259 |
| Gossypium hirsutum | D01 | 3 | CH_ghi_555 | 3 | 8 | 0.000326251 |
| Lonicera japonica | GWHAAZE00000004 | 3 | CH_lonja_152 | 6 | 27 | 0.000000000197301 |
| Malus domestica | Chr05 | 3 | CH_mdo_250 | 4 | 13 | 0.000000452394 |
| Manihot esculenta | Chromosome18 | 3 | CH_mes_232 | 3 | 3 | 0.00000743899 |
| Manihot esculenta | Chromosome02 | 3 | CH_mes_422 | 3 | 10 | 0.000889916 |
| Medicago truncatula | chr5 | 3 | CH_mtr_329 | 4 | 9 | 0.000000391221 |
| Nicotiana tabacum | Nitab4.5_0000469 | 3 | CH_nta_45 | 3 | 3 | 0.00000151713 |
| Olea europaea | chr7 | 3 | CH_oeu_93 | 3 | 3 | 0.00000122238 |
| Petunia axillaris | Peaxi162Scf00041 | 3 | CH_pax_3 | 8 | 8 | 1.17701e-22 |
| Quercus lobata | 3 | 3 | CH_qlo_5 | 15 | 23 | 1.4004e-39 |
| Quercus lobata | 5 | 3 | CH_qlo_795 | 3 | 5 | 0.000130855 |
| Rhododendron simsii | chr07 | 3 | CH_rsi_235 | 3 | 3 | 0.000000749582 |
| Striga asiatica | scaffold67 | 3 | CH_sas_4 | 5 | 6 | 0.00000000000300601 |
| Salvia bowleyana | GWHASIU00000005 | 3 | CH_sbo_259 | 3 | 3 | 0.00000549925 |
| Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_430 | 3 | 8 | 0.000307398 |
| Simmondsia chinensis | GWHAASQ00000001 | 3 | CH_sci_254 | 3 | 14 | 0.000650976 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_287 | 5 | 5 | 0.00000000000142152 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_227 | 3 | 3 | 0.00000147795 |
| Solanum pennellii | Spenn-ch04 | 3 | CH_spe_163 | 3 | 3 | 0.000000652882 |
| Theobroma cacao | Chromosome_4 | 3 | CH_tca_204 | 4 | 14 | 0.00000359421 |
| Theobroma cacao | Chromosome_8 | 3 | CH_tca_213 | 3 | 3 | 0.00000656565 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_155 | 3 | 3 | 0.00000284963 |
| Vanilla planifolia | CM028157.1 | 3 | CH_vpl_142 | 3 | 3 | 0.00000793558 |
| Vitis vinifera | chr5 | 3 | CH_vvi_75 | 5 | 5 | 0.00000000000661257 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 4 | CH_atr_153 | 3 | 3 | 0.00000772476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 4 | CH_atr_188 | 3 | 5 | 0.0000771725 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 4 | CH_atr_80 | 4 | 5 | 0.000000023003 |
| Brassica carinata | ChrC08 | 4 | CH_bca_146 | 4 | 4 | 0.00000000620901 |
| Brassica carinata | ChrB08 | 4 | CH_bca_8 | 8 | 8 | 2.89807e-22 |
| Capsicum annuum | PGAv.1.6.scaffold517 | 4 | CH_can_49 | 6 | 6 | 4.33453e-16 |
| Coffea canephora | chr1 | 4 | CH_ccan_346 | 2 | 2 | 0.000447185 |
| Citrus clementina | scaffold_2 | 4 | CH_ccl_220 | 3 | 3 | 0.0000028869 |
| Carica papaya | supercontig_66 | 4 | CH_cpa_102 | 3 | 3 | 0.00000493474 |
| Carica papaya | supercontig_166 | 4 | CH_cpa_103 | 3 | 3 | 0.00000493474 |
| Eucalyptus grandis | Chr07 | 4 | CH_egr_146 | 6 | 6 | 1.91288e-16 |
| Erythranthe guttata | scaffold_3 | 4 | CH_egut_36 | 7 | 8 | 8.3373e-17 |
| Erythranthe guttata | scaffold_3 | 4 | CH_egut_60 | 6 | 7 | 0.0000000000000953978 |
| Fragaria x ananassa | Fvb5-2 | 4 | CH_fan_297 | 3 | 4 | 0.0000173259 |
| Gossypium hirsutum | D01 | 4 | CH_ghi_555 | 3 | 8 | 0.000326251 |
| Lonicera japonica | GWHAAZE00000004 | 4 | CH_lonja_152 | 6 | 27 | 0.000000000197301 |
| Malus domestica | Chr05 | 4 | CH_mdo_250 | 4 | 13 | 0.000000452394 |
| Manihot esculenta | Chromosome18 | 4 | CH_mes_232 | 3 | 3 | 0.00000743899 |
| Manihot esculenta | Chromosome02 | 4 | CH_mes_422 | 3 | 10 | 0.000889916 |
| Medicago truncatula | chr5 | 4 | CH_mtr_329 | 4 | 9 | 0.000000391221 |
| Nicotiana tabacum | Nitab4.5_0000469 | 4 | CH_nta_45 | 3 | 3 | 0.00000151713 |
| Olea europaea | chr7 | 4 | CH_oeu_93 | 3 | 3 | 0.00000122238 |
| Petunia axillaris | Peaxi162Scf00041 | 4 | CH_pax_3 | 8 | 8 | 1.17701e-22 |
| Quercus lobata | 3 | 4 | CH_qlo_5 | 15 | 23 | 1.4004e-39 |
| Quercus lobata | 5 | 4 | CH_qlo_795 | 3 | 5 | 0.000130855 |
| Rhododendron simsii | chr07 | 4 | CH_rsi_235 | 3 | 3 | 0.000000749582 |
| Striga asiatica | scaffold67 | 4 | CH_sas_4 | 5 | 6 | 0.00000000000300601 |
| Salvia bowleyana | GWHASIU00000005 | 4 | CH_sbo_259 | 3 | 3 | 0.00000549925 |
| Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_430 | 3 | 8 | 0.000307398 |
| Simmondsia chinensis | GWHAASQ00000001 | 4 | CH_sci_254 | 3 | 14 | 0.000650976 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_287 | 5 | 5 | 0.00000000000142152 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_227 | 3 | 3 | 0.00000147795 |
| Solanum pennellii | Spenn-ch04 | 4 | CH_spe_163 | 3 | 3 | 0.000000652882 |
| Theobroma cacao | Chromosome_4 | 4 | CH_tca_204 | 4 | 14 | 0.00000359421 |
| Theobroma cacao | Chromosome_8 | 4 | CH_tca_213 | 3 | 3 | 0.00000656565 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_155 | 3 | 3 | 0.00000284963 |
| Vanilla planifolia | CM028157.1 | 4 | CH_vpl_142 | 3 | 3 | 0.00000793558 |
| Vitis vinifera | chr5 | 4 | CH_vvi_75 | 5 | 5 | 0.00000000000661257 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |