Functional clusters

Information

  • Type Gene Ontology
  • Description polysaccharide metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica rapa A09 3 CH_bra_154 5 5 0.0000226221
Daucus carota DCARv2_Chr1 3 CH_dca_142 6 6 0.000000577003
Lupinus albus Lalb_Chr02 3 CH_lal_258 5 5 0.0000808509
Quercus lobata 9 3 CH_qlo_791 5 6 0.000125476
Brassica rapa A09 4 CH_bra_154 5 5 0.0000226221
Daucus carota DCARv2_Chr1 4 CH_dca_142 6 6 0.000000577003
Lupinus albus Lalb_Chr02 4 CH_lal_258 5 5 0.0000808509
Quercus lobata 9 4 CH_qlo_791 5 6 0.000125476

Available child term results

Ontology identifier Description Number of clusters
GO:0000271 polysaccharide biosynthetic process 2
GO:0000272 polysaccharide catabolic process 10
GO:0005983 starch catabolic process 4
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 38
GO:0009250 glucan biosynthetic process 4
GO:0009251 glucan catabolic process 8
GO:0009969 xyloglucan biosynthetic process 4
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010383 cell wall polysaccharide metabolic process 26
GO:0010394 homogalacturonan metabolic process 12
GO:0010398 xylogalacturonan metabolic process 6
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010412 mannan metabolic process 2
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010493 Lewis a epitope biosynthetic process 4
GO:0010581 regulation of starch biosynthetic process 4
GO:0019252 starch biosynthetic process 2
GO:0030244 cellulose biosynthetic process 10
GO:0030245 cellulose catabolic process 8
GO:0031222 arabinan catabolic process 8
GO:0032881 regulation of polysaccharide metabolic process 6
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0035884 arabinan biosynthetic process 6
GO:0044042 glucan metabolic process 2
GO:0044264 cellular polysaccharide metabolic process 2
GO:0045488 pectin metabolic process 4
GO:0045489 pectin biosynthetic process 10
GO:0045490 pectin catabolic process 10
GO:0045492 xylan biosynthetic process 18
GO:0045493 xylan catabolic process 76
GO:0048358 mucilage pectin biosynthetic process 4
GO:0051070 galactomannan biosynthetic process 8
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:1900030 regulation of pectin biosynthetic process 2
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:1990937 xylan acetylation 10
GO:2000905 negative regulation of starch metabolic process 6
GO:2001006 regulation of cellulose biosynthetic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001